BAC Information

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BAC

Clone NameMSMg01-187C09
Chromosome2 (Build37)
Map Location 38,872,513 - 38,873,062
singlet/doubletsinglet
Overlap geneGolga1
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l
Downstream geneA930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187C09.T7 (MSMg01no187_c09.b1)MSMg01-187C09.TJ (MSMg01no187_c09.g1)
ACCAG378601AG378602
length719722
length of high quality
(start - end)
554 (45 - 598)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no187_c09.b1 PHD_FILE: MSMg01no187_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:22 2005CHROMAT_FILE: MSMg01no187_c09.g1 PHD_FILE: MSMg01no187_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCATATTACCACTGAGCAAATGCCAGTCACACTTCTACTTAAGA
ATAACCTGCTGAATTCACTGGAAGCAGGCTGTCCCTCTCCTACCCTCGTT
ATTTCTGATGACACTACATTGATATATAGCACTCAGGCAGCCCAGCTGAC
TTCCACACTTGATAGCACACATGCCTCCGTTTTAGCTGATAGAAACTTAC
ATTCATTTTTACACTTGATCTGGATAAGCCACATCAGATCCCAAGGGAAG
CCATTTGATTGAGTTTGATGAAAGTGTTTCACTAGCGAGTAAGCCAATAA
TTGGAGCTTTTAAAGTTACCATGTATCTAGGTAAATTTATGTTCTTCAGC
TTAAACCCCACATATGCATGTACATGCATATAATGTGTCATACAGAAATC
GAAGTTTTGTAGCATTTGCCTTCTAAGTCTAAATCAGGATGGCATTGCTT
TGGCTGTGGCTCTTCTTACAGGAGTTTCCCTTTAGGGTGCCACTTCCCAT
TTAGTGGGGACATGAAACTAGAGCCCCACTGTTATGTGATTTTACAGAGG
ACGATGTAGCTTCTCCAAGTAGGATTCCTTCCCTTCCTCCTGTCCCAGGT
AAGAAATCCCAGAGGACTGAACAGTCCACAGCCCTCCAGAATCAGCTGCA
GTTTCAGCTCTGGAAGCTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCCTGACTTCCATCCCCTTCT
GTGAGATTTGTTACCTAAAAGTATAAGATAAAATCATTCTGTACTGGAGA
GGTGGCTCAGTGGGTAAGTGCACTGTTGCTCTTGAAGCAGACCTGGGTTC
AATTCCCAGGTCCTACATGGCAGCTGACAGCTGTAACTCTAGTTACATGG
GATCCATCCCCTTTGGGGGAGCTGCGGCGGGGAAAGTCGTTTCATTTTGT
TGAGATAAGGTTTCTCTTATGTCACAGCCCTGGTTGTCCTGGAACTTCAT
CTGTATATTATCAGACCCCCGTTGGCCTTGAACTCACAGAGATCTGCCTT
TCTCTGCCTCCCAAGCGGTGGAACTAAAGGCATGTACTGAAAGAAAATAA
AACTTGAGACCTGTGATTCATGTAATTATGTCAAATAGCCCAAAGAGTTG
TTTGTGAGCTTTGAAACCTGGGGCTGAGAACATAGCAGAACAGGCCAGGA
CATGCCCGGGGAAGGCCCATCCTTAAGACATTCCTGAGGCTGCTTGGCCA
TAAAGATAAAGATAAAGATAATGACTTGTCCGCACTGGCCCGGCGCCTCC
CTATCTCCCGCCCTTCTGACCTAAGTTAAATGTTATCTGCATGTACAGTC
TGCTGATGTTTAAATGAACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_c09.b1 MSMg01no187_c09.b1 CHROMAT_FILE:
MSMg01no187_c09.b1 PHD_FILE: MSMg01no187_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:22 2005
         (554 letters)



>mm_chr2_38872309_38873262
          Length = 954

 Score = 1033 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcatattaccactgagcaaatgccagtcacacttctacttaagaataacctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattctctcatattaccactgagcaaatgccagtcacacttctacttaagaataacctg 695

                                                                       
Query: 65  ctgaattcactggaagcaggctgtccctctcctaccctcgttatttctgatgacactaca 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctgaattcaatggaagcaggctgtccctctcctaccctcgttatttctgatgacactaca 635

                                                                       
Query: 125 ttgatatatagcactcaggcagcccagctgacttccacacttgatagcacacatgcctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttgatatatagcactcaggcagcccagctgacttccacacttgatagcacacatgcctcc 575

                                                                       
Query: 185 gttttagctgatagaaacttacattcatttttacacttgatctggataagccacatcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gttttagctgatagaaacttacattcatttttacacttgatctggataagccacatcaga 515

                                                                       
Query: 245 tcccaagggaagccatttgattgagtttgatgaaagtgtttcactagcgagtaagccaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcccaagggaagccatttgattgagtttgatgaaagtgtttcactagcgagtaagccaat 455

                                                                       
Query: 305 aattggagcttttaaagttaccatgtatctaggtaaatttatgttcttcagcttaaaccc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 454 aattggagcttttaaagttaccatgtatctaggtaaatttatgttcttcagcttaaaggc 395

                                                                       
Query: 365 cacatatgcatgtacatgcatataatgtgtcatacagaaatcgaagttttgtagcatttg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aacatatgcatgtacatgcatataatgtgtcatacagaaatcgaagttttgtagcatttg 335

                                                                       
Query: 425 ccttctaagtctaaatcaggatggcattgctttggctgtggctcttcttacaggagtttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccttctaagtctaaatcaggatggcattgctttggctgtggctcttcttacaggagtttc 275

                                                                       
Query: 485 cctttagggtgccacttcccatttagtggggacatgaaactagagccccactgttatgtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cctttagggtgccacttcccatttagtggggacatgaaactagagccccactgttatgtg 215

                     
Query: 545 attttacaga 554
           ||||||||||
Sbjct: 214 attttacaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)