BAC Information

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BAC

Clone NameMSMg01-187I15
Chromosome2 (Build37)
Map Location 152,489,621 - 152,489,925
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1
Downstream geneH13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187I15.T7 (MSMg01no187_i15.b1)MSMg01-187I15.TJ (MSMg01no187_i15.g1)
ACCAG378854AG378855
length746767
length of high quality
(start - end)
310 (45 - 354)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no187_i15.b1 PHD_FILE: MSMg01no187_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:53 2005CHROMAT_FILE: MSMg01no187_i15.g1 PHD_FILE: MSMg01no187_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAACGTGTATAGACTAACTGCTTTTAAAAGGAAACAAGGAATGA
CAACATGTCCCCTCTCCCGTAGCAGTCAAATGCCCATTAAAAGCAGCATC
TGTACAAAGATGTAAATCTCAAAGGCAGCAGGTGAGTAGGTAGAACATAA
TGTGGTAATACAATTTTAGCAACAACAAGATGCTTCGCAAGAGGTAAGAG
AGGCAACACACAAACTAGCTGTATAATTAAAGTTTGCAACCCTAACCTAG
TCAACAAGCCAACTGAACAAGCACATCTGCCCTGCCTTACACACTACAAT
GTCTTTTTTTACCACGCACATTATTCAAAGATGAAGAAGTAAGTTCTCTT
TATTCCACCCCCCGTGTGAACCAGATGCCAGGCATGGGCTTTCCACTGCT
TCTCCTGAGCGTGTGTCTTTTGGGAATGGCTCTCTCTTTTTCAGGATGTT
TGGAAACAGCCTGGGGAATTCTTCAGCTTCCTTTTATTTTATTTTATTTC
ATTTCATTTCATTTCATTTTCTTTTCTTTTCCTTTTCTTCTCTTTTCTTT
TCTTTTTCTTTTCTTCCTTTTCTCCCACTTTCCTGTCACTTTTTTACCTG
CCTAAACACTTCTTGCACCCCTGTTTTCCCTATTTTCAGGTTTTCTTTGA
CAATAACTTATCTTTTTTTCCCTCTATATAATACCTCTACCATTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGATCTTCGCAATACCAAGGGCCTCTC
CTCCCATTGATGGCCGACTAGCCCATCCTCTGCTACATATGCAACTAGAG
ACACAGCTCTGCGGGGTACTGGTTAGTTCATATTGTTGTTTCTCCTATAG
GGTTGCAGACCCCTTTAGTTACTTGGGTACTTTCTCTAGCTCCTCCATTG
GGGGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCATATACACTG
TAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACGGATG
GTTGTGAGTCACCATGTGGCCGCTGGGATTTGAACTCAGAACCTCTGGAA
AAGCAGTTACCCCTCTTAACCACTGAGCCATCTCTCCAGCCCCTATTTAT
TTATTTTTGTTTTGTTTCCCCAGACACCTTTTCTCTGCGCAGATCTGTCT
GACCTGAATTTTTCTCTTTCCCCTATACCGCCCTCAAGTTTTTCATATTT
GCCCACCCCTTTTCTCCCCCCCTCCTGTTTTTTTCCTTCCTTTCCCCCCC
CACTTTTTCCCTATCCATTTTTTTTTTTCCATTTCCCACTCATTTTTCTT
ATTTCTCATTTTCTTTATATCTTTCCACTATATATTCACCATCTCCCTTT
TTCACCCCCCCTTTTCTTTCAATCATCACTTAATTTCTTTTTTCACCTCT
TTCTTACCTTTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_i15.b1 MSMg01no187_i15.b1 CHROMAT_FILE:
MSMg01no187_i15.b1 PHD_FILE: MSMg01no187_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:53 2005
         (310 letters)



>mm_chr2_152489417_152490126
          Length = 710

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaacgtgtatagactaactgcttttaaaaggaaacaaggaatgacaacatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaacgtgtatagactaactgcttttaaaaggaaacaaggaatgacaacatgt 264

                                                                       
Query: 65  cccctctcccgtagcagtcaaatgcccattaaaagcagcatctgtacaaagatgtaaatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccctctcccgtagcagtcaaatgcccattaaaagcagcatctgtacaaagatgtaaatc 324

                                                                       
Query: 125 tcaaaggcagcaggtgagtaggtagaacataatgtggtaatacaattttagcaacaacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaaaggcagcaggtgagtaggtagaacataatgtggtaatacaattttagcaacaacaa 384

                                                                       
Query: 185 gatgcttcgcaagaggtaagagaggcaacacacaaactagctgtataattaaagtttgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatgcttcgcaagaggtaagagaggcaacacacaaactagctgtataattaaagtttgca 444

                                                                       
Query: 245 accctaacctagtcaacaagccaactgaacaagcacatctgccctgccttacacactaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accctaacctagtcaacaagccaactgaacaagcacatctgccctgccttacacactaca 504

                
Query: 305 atgtc 309
           |||||
Sbjct: 505 atgtc 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)