BAC Information

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BAC

Clone NameMSMg01-188B02
Chromosome2 (Build37)
Map Location 41,746,966 - 41,747,291
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188B02.T7 (MSMg01no188_b02.b1)MSMg01-188B02.TJ (MSMg01no188_b02.g1)
ACCAG379204AG379205
length768752
length of high quality
(start - end)		330 (45 - 374)---
definitionCHROMAT_FILE: MSMg01no188_b02.b1 PHD_FILE: MSMg01no188_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:35 2005CHROMAT_FILE: MSMg01no188_b02.g1 PHD_FILE: MSMg01no188_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAAGAGATAAAAGTCTATGTTTAATACCACGTTAAATACCAAAT
ATTAAATTACTATATTTTCGTGATGCTTTGATGCCAGGGACAGCATGAAA
TATACCACAGCTGCTATTAAAATTACCCTGTTAATTCTTTTGAATGGTGA
TGCGTTTTGACAAGAAAATATTTTTTTTTTGTACAGTACAGTCTTACATG
CTCTAAGCATTTCTTAATTATATTTAGGACATTAGTAAGTAGTTGTTGAT
TTTTTATAAAATATTTCAAATATGTATACAAAAGCAACTTAAAATTTCAG
AGGAAAGAATGCTCTTGCACTAAGCCTTGCAATTTTGCCCACATCTATGG
CTGCTCTTAGCATCTCAGGGTAGTTTTTCTTTATTAAGCTGCAATATGTT
TTAGGAAGAATGTGTTCTGTTGTTGTTTACATTGAAAAAGGGTAGCAGAC
AAACTATAACAAAAGTAACCCCAATAGGCTTAAATTCTACCTTGGATGTG
TGTATTAATTAAATGATTAGATGACAGAATGAACAACAAATTGTGTGTGT
GGGTGTGTGTGTGTGTGTGTGTGTTACCATCGCACCTTATTCCTCTTCTT
TTACTCTCCCCTCCCCGCTTCTTCCCCTTTCTCCTTCACTAACGTTTCCA
TCCTCTCGCCCTACCTCTTCAAATACATAACTACGACTCACTTATCATCC
CCTCACCATTATTTTCTG

AATNCAGAAGAGGGGGGGAGGAGAGGAAGGGAGGCAATAAAACNNAGAGG
AACCAAAGGAAGAAGGGGGAGGCCTGGCGGCCGCCTGGTTTTCGGAAAGA
NNNGANNNANNGNNGGTGGCAAGAAAGAGGGGNNGNNAANNNGANNNNGA
AAGGGAAAGAAANNANNATTTTTCGCGAAAAAAGAGGGGGGANNNNGAAN
ANNAGGGAAAGGAGGAAGGGAGAGGGAGGNAGNAAAAANAGGGGNNAAAA
GNAGNNNANNGGAANNANAGNNAGGNANNNAANGGNAAAAGGNAANAAGG
AGAGTTTTANTTGGTTATTATTTTGGATAGNTGGATAGGTTATAGGGGAA
GTNAAATATGGNTGGNTGATTTTTTTTTTANAGAGAAGAANNAGAAGGGA
AANANGGANNTATATTTGTTAAGCAAAAAGCAACTGGATTTAGATCCTTG
ATATGGACCGGTAGGTACAAATTTCAAGATACAAATCTGATGTAGAAGAT
TGATTCTCAGACCTAATAAGGTAAAATTGCCTGCTAAAATTCTGAAAAAT
GTCTGATTTGGTAGATCTGGAAGAGGGTGTGAAATTCTATTAGGGTATAG
ATCAGAGTATAATGGGCCAGGGAGTAAAATACAGAATATCCGATGAAGGT
ATAGAGAGTTTTGTGAAGAATTACGAATAGGGGAAATTAAAGAGAGGCAG
AAGGTATTTATTAAAGGGAAGGGGGAAGAGGAATTAGTAGGAATGAAGGG
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_b02.b1 MSMg01no188_b02.b1 CHROMAT_FILE:
MSMg01no188_b02.b1 PHD_FILE: MSMg01no188_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:35 2005
         (330 letters)



>mm_chr2_41746762_41747491
          Length = 730

 Score =  563 bits (291), Expect = e-165
 Identities = 318/327 (97%), Gaps = 2/327 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaagagataaaagtctatgtttaataccacgttaaataccaaatattaaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 530 gaattcttaaagagataaaagtctatgtttaataccacgttaaataccaaacattaaatt 471

                                                                       
Query: 65  actatattttcgtgatgctttgatgccagggacagcatgaaata-taccacagctgctat 123
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 470 actatatttttgtgatgctttgatgccagggacagcatgaaatattaccacagctgctat 411

                                                                       
Query: 124 taaaattaccctgttaattcttttgaatggtgatgcgttttgacaagaaaatattttttt 183
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| 
Sbjct: 410 taaaactaccctgttaattcttttgaatagtgatgcgttttgacaagaaaata-tttttc 352

                                                                       
Query: 184 tttgtacagtacagtcttacatgctctaagcatttcttaattatatttaggacattagta 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 351 tttgtacagtacagtcttacatgctctaagcatttcataattatatttaggacattagta 292

                                                                       
Query: 244 agtagttgttgattttttataaaatatttcaaatatgtatacaaaagcaacttaaaattt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agtagttgttgattttttataaaatatttcaaatatgtatacaaaagcaacttaaaattt 232

                                      
Query: 304 cagaggaaagaatgctcttgcactaag 330
           |||||||||||||| ||||||||||||
Sbjct: 231 cagaggaaagaatgatcttgcactaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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