BAC Information

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BAC

Clone NameMSMg01-188K23
Chromosome2 (Build37)
Map Location 142,175,360 - 142,175,674
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188K23.T7 (MSMg01no188_k23.b1)MSMg01-188K23.TJ (MSMg01no188_k23.g1)
ACCAG379625AG379626
length732780
length of high quality
(start - end)
322 (67 - 388)138 (76 - 213)
definitionCHROMAT_FILE: MSMg01no188_k23.b1 PHD_FILE: MSMg01no188_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:25 2005CHROMAT_FILE: MSMg01no188_k23.g1 PHD_FILE: MSMg01no188_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGNGCCCCCCNNNNNCATATCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGAATTCTCTGTAAATGTTCCTTTCCCTATA
TCTCCCATGGGAGTGATACCAAACTTTCAAGACTATAAATATAGTGACAC
TTGGTAGGCTGTTTGTTCCTAAAATGGAAGCACTTGGCCATGGAAAACTA
GAACACTGTTACCTGGCCATTTAACATTGCTGCAAGCAAGTGATGTAGTT
TTCCTAGATGCTATAGTCATGGTATTTAAAAACAAAACAAAACAAAACAC
CCATTTCAGGGAAGATGCACCGAAGCCATCCCAAATCATCCATCACAGTG
GGATCTCAAATATGAATTTTAATATGTACTTTTTATTACACCCCGCACAT
GGCAAAACTTAGAGGGGCAGCCCTTATTCCAATCTCACTCCAAAATTAAG
AGGGATGTATGATGGTTATTCTTGGTTGTCAACTTGACCACATCTGGAAT
TGTAACAGAAGAAGCATAACTGACTCTGTGATGGAAATATGATTCATGCT
GTAAACCTCAGCACATAGATAGCACCGTCCACCAAAATGAAAACAAGGAC
CTAATCCATCAAAGTTCATAGTTCTGAGAAAGTCTCTAAACGGACTGACC
TTGATTTTTGGCTTCTGTAATTCTGCTTTTGGCTAACTGTTCTTGCTAAC
TGAAGTATGTCAACCCAGAACATAGTTTTGAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGCTTTAACTGCGTAATTTTC
TAGGCCATCTTTGAAGATAAAGCTTTTTTAAAGTTAAGGGCAAAACTACA
GGTTTTTTGTTTGTTTGCATGCTTGCTTGGTTTGTTGGTTGGTTGGTTGG
TTGGTAGGTTGCCCTTCCCCCCCCTCTCTTTCCTTCTTCTCCCTCCCCCT
TTTCTCTCTCTCTCTTTTCCCCCCCTTTCCTCTTCTCTCTCTCCTCCNCT
CCCCCCCTTCCTCCCCCCCCCTTCCTTTTTAACAATACTCTCCTCTTAAC
CCCAAAACATTTTTTTTTTTTCCCCCCACCCCCCCCCCCAATCCCTATTT
TTTTTTCTTTTTTCTNCCTCTCCCCCAAAAAAAAAAAAAAAAATTCTCGG
GCGGCGGGCGCCCTTTCTTCCCCTCCCTTTCCTCCCTCTTTCGTCCTCTT
CCTCTCTTCCTCTTCCTAACCCTTACCTTCATTTTTTTCTTCACACACTC
CTTATATCCCATCATCACATTCCCATTCCTTCTTATTCCTCTCCGCTCTT
TTCCATTTTATTCATCCTTTTACATATACCCCCTCCCTCCTCCACCTTTT
TCTTTACCCCTCACCTCTCTATCCCCCCTTTTTTCCCTTCCCCCTTCTCT
TACTACCCATTTTCCAACTTTATTTACTCTTTCTCCTCCCCCCCCATACT
CTTACACTTTTACCTACTCCCCCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_k23.b1 MSMg01no188_k23.b1 CHROMAT_FILE:
MSMg01no188_k23.b1 PHD_FILE: MSMg01no188_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:25 2005
         (322 letters)



>mm_chr2_142175263_142175984
          Length = 722

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtaaatgttcctttccctatatctcccatgggagtgataccaaactttcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaattctctgtaaatgttcctttccctatatctcccatgggagtgataccaaactttcaa 353

                                                                       
Query: 65  gactataaatatagtgacacttggtaggctgtttgttcctaaaatggaagcacttggcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gactataaatatagtgacacttggtaggctgtttgttcctaaaatggaagcacttggcca 293

                                                                       
Query: 125 tggaaaactagaacactgttacctggccatttaacattgctgcaagcaagtgatgtagtt 184
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 292 tggaaaactagaacactgttacctggccatttaacaatgctgcaagcaagggatgtagtt 233

                                                                       
Query: 185 ttcctagatgctatagtcatggtatttaaaaacaaaacaaaacaaaacacccatttcagg 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ttcctagatgctatagtcgtggtatttaaaaacaaaacaaaacaaaacacccatttcagg 173

                                                                       
Query: 245 gaagatgcaccgaagccatcccaaatcatccatcacagtgggatctcaaatatgaatttt 304
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 172 gaagatgcaccgaagccatcccaaatcattcatcacagtgggatcccaaatatgaatttt 113

                          
Query: 305 aatatgtacttttta 319
           |||||||||||||||
Sbjct: 112 aatatgtacttttta 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)