BAC Information

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BAC

Clone NameMSMg01-188N03
Chromosome2 (Build37)
Map Location 62,436,851 - 62,503,394
singlet/doubletdoublet
Overlap geneIfih1, Gca
Upstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap
Downstream geneKcnh7, EG667257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188N03.T7 (MSMg01no188_n03.b1)MSMg01-188N03.TJ (MSMg01no188_n03.g1)
ACCAG379715AG379716
length748769
length of high quality
(start - end)		316 (62 - 377)434 (76 - 509)
definitionCHROMAT_FILE: MSMg01no188_n03.b1 PHD_FILE: MSMg01no188_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:35 2005CHROMAT_FILE: MSMg01no188_n03.g1 PHD_FILE: MSMg01no188_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,503,082 - 62,503,394)(62,436,851 - 62,437,284)
sequence
TTCCTCTTTTTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCAAGCAAGTAACTACAAGCAAACCAGTTTC
AGTAAAGTGTGTATTGAAGCTGAAGGCCTAGAACTGAAAAATTACTTTTT
AAGCTAATCACTTACTCCCAAGGGTAGGGATTATTTTTTGAAGCCCATGA
TCACATGTCAATGTCTACACCTATCTGTAACAAAACACTAATGTCTCTTT
TTAGGGAACAACAAATAGCAACAGGCCTAGGAAATCTGCTCTCTTCTGCC
AGCACTGCAGTGACCACTGCCCAGCCACACTACATAGCCGGCCTCACTGG
GCAGAACATTGATGAGGGGAGTGAAAGTTTATCTTCCTCCCCCCCAGGAA
GGGTCTACCCACAGGTTGCAATAATGACTTGAAACTCTCAGAGGTACTGA
GGATTAAGGTTACAGAAGAGGGAACAGCCGAACCCCTCCAAAAGCAAAGT
CTAGAAAATCCGGTCGCGCTTGGTACTATAGAAAAAGAAAAGTTTACGAG
GCACTGAACGTACATCTCAATTTTTTTTTCATAAGTATCTTAAAAGATAA
GATATGGTTGCATCAAGACAACCAGAAACACTACTTATGCCTGTCGATTA
ATCACCTAAGGTAAATGGTACTACGACATGGACTTTTTGCTCACTCCCCT
CCTATTAACTAAATTCCTACAAAGCTACAATTCCTTCCCACCCACCGT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTGTCATATTGACATGATGCATC
TTCTCAATGACATGGATGTTTTCTCCCGAGCAGACCAGCATGCTACAATT
TTTGCAGAGAAGTGTTATTAACGATGGATTGTCGTTGTATTGCTTTGCAA
TGCTTCTTTTGACTTTCATTTTCTTTTCCAGGATACTTTGCACCTGCAAT
TCCAAAATCTGTGTGGAGAAAAGAAGAGAGTATTCAATTTCTTCCCTAGT
TTTATGGAAGTAAACGAGCTGAAAATTGCATATCACAGGTAGATTGTACT
CTAGAAGATGAAGAGATAATGGCGTGGGATAAACTTAGTTTTTCCTCTTC
TACTGGAATTTACCTAAGTCTAAGCACAAAGAAATGATAGGCAGAAAGTC
TTTGGGTGAGGTCATGGGCTGGGGGAGTGTTTGGATTCAGTCTAGATGTT
TAATATAATTTTAAGTTTTCAGTATAACTGACCTTTTATGACCACGCAAA
ACAGATTTTGCTATCAGGATACAATCTCACGCTTTATTATTTGTTAGCCA
CCATCTCTGTTTTTACTAGCTTTTCTTCCTTGACCTATTTAACTACTTCC
CTTATCTTCTGTATGTGTCTCTTATGCTTTTTTTCCACACCTCTATTTCC
TATCGTAACCTTGTTCCCTTTTTCATCTTCGACTTTACATCTCAATTCTT
CATTCCTATCTTCCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_n03.b1 MSMg01no188_n03.b1 CHROMAT_FILE:
MSMg01no188_n03.b1 PHD_FILE: MSMg01no188_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:35 2005
         (316 letters)



>mm_chr2_62502879_62503594
          Length = 716

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagcaagtaactacaagcaaaccagtttcagtaaagtgtgtattgaagctgaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggaattcaagcaagtaactacaagcaaaccagtttcagtaaagtgtgtattgaagctgaa 457

                                                                       
Query: 64  ggcctagaactgaaaaattactttttaagctaatcacttactcccaagggtagggattat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggcctagaactgaaaaattactttttaagctaatcacttactcccaagggtagggattat 397

                                                                       
Query: 124 tttttgaagcccatgatcacatgtcaatgtctacacctatctgtaacaaaacactaatgt 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttttgaagcccataatcacatgtcaatgtctacacctatctgtaacaaaacactaatgt 337

                                                                       
Query: 184 ctctttttagggaacaacaaatagcaacaggcctaggaaatctgctctcttctgccagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctctttttagggaacaacaaatagcaacaggcctaggaaatctgctctcttctgccagca 277

                                                                       
Query: 244 ctgcagtgaccactgcccagccacactacatagccggcctcactgggcagaacattgatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctgcagtgaccactgcccagccacactacatagccggcctcactgggcagaacattgatg 217

                        
Query: 304 aggggagtgaaag 316
           |||||||||||||
Sbjct: 216 aggggagtgaaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_n03.g1 MSMg01no188_n03.g1 CHROMAT_FILE:
MSMg01no188_n03.g1 PHD_FILE: MSMg01no188_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:36 2005
         (434 letters)



>mm_chr2_62436651_62437484
          Length = 834

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtgtcatattgacatgatgcatcttctcaatgacatggatgttttctcccgagcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgtcatattgacatgatgcatcttctcaatgacatggatgttttctcccgagcagac 260

                                                                       
Query: 61  cagcatgctacaatttttgcagagaagtgttattaacgatggattgtcgttgtattgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcatgctacaatttttgcagagaagtgttattaacgatggattgtcgttgtattgctt 320

                                                                       
Query: 121 tgcaatgcttcttttgactttcattttcttttccaggatactttgcacctgcaattccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaatgcttcttttgactttcattttcttttccaggatactttgcacctgcaattccaa 380

                                                                       
Query: 181 aatctgtgtggagaaaagaagagagtattcaatttcttccctagttttatggaagtaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctgtgtggagaaaagaagagagtattcaatttcttccctagttttatggaagtaaac 440

                                                                       
Query: 241 gagctgaaaattgcatatcacaggtagattgtactctagaagatgaagagataatggcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagctgaaaattgcatatcacaggtagattgtactctagaagatgaagagataatggcgt 500

                                                                       
Query: 301 gggataaacttagtttttcctcttctactggaatttacctaagtctaagcacaaagaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggataaacttagtttttcctcttctactggaatttacctaagtctaagcacaaagaaat 560

                                                                       
Query: 361 gataggcagaaagtctttgggtgaggtcatgggctgggggagtgtttggattcagtctag 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gataggcagaaagtctttgggtgaggtcatgggcggggggagtgtttggattcagtctag 620

                         
Query: 421 atgtttaatataat 434
           ||||||||||||||
Sbjct: 621 atgtttaatataat 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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