BAC Information

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BAC

Clone NameMSMg01-188O16
Chromosome2 (Build37)
Map Location 34,395,134 - 34,421,899
singlet/doubletdoublet
Overlap geneMapkap1, LOC623448
Upstream geneLOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948
Downstream geneLOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188O16.T7 (MSMg01no188_o16.b1)MSMg01-188O16.TJ (MSMg01no188_o16.g1)
ACCAG379775AG379776
length836752
length of high quality
(start - end)		224 (141 - 364)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no188_o16.b1 PHD_FILE: MSMg01no188_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005CHROMAT_FILE: MSMg01no188_o16.g1 PHD_FILE: MSMg01no188_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,421,676 - 34,421,899)(34,395,134 - 34,395,422)
sequence
CCCCCCCNCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCATTCTTTTCATCTACATTTTCAAAATTTCCAC
AGTGGAATTTTTCAAAGGGAATGGCTTTAGTGTTTCCCGTGCCAGCGGTG
CAAGTGTAGGGTTGAGAGACAAAGGGATCCCTGGGCCTTGGGCCAGGCAG
TCCAACCCAAGCTCAGGGTCAGTGAGACCTTGCTTCAAAAGATGAGGGAG
AGTGATGAGGAGGCAGAGGGGTGAAGCACTGGCTTCCCACGCCTCTCCAT
GGGCAAGGGGATTTACACATACAGACATACACATACAGCCCTTGCTATAT
GTTTAAGGGTTGTGGTATCAGTTGTTTTTTTTTTTCCCCCCCCCCCCCCC
TATTATTAATATTTTTTTTTATTTTTTTTTCCCCCCCCTTTTATAAAAAA
AAAAAACAATCCCTGGTTTTCTCCTTTTTTTTTAATTATTTTATCTTTAT
TCTTAATTACTATCCTCCTATATTAATAACTCTTTTTTTTATTATATTTA
ATTTATTCTTTTTTTCTACTATATTTTTAGAACAATTAATAATTTATAAA
TGACATCAAATCCAATACACACATTTTTCTTATTTTATTTATTTTCTTTT
TATACTTATATATTTTTTATATATCTATCTCACTAATATATTTTTGAATA
ATCCATATAGAAAACCTACACACATAATATTCACTATCATATACATAGAT
CCTATTTATATTCCTTTAACTCTTTTTGTACCCTTATATTCTATTGTTCT
TATTTATTAATCTCCTTATTATTAATATATATTTAC

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTTGTAATTGCACAGTTTGTCTGT
ATTGGTGTCAGTTCTAATGTTTTATGTCTAGCTTTCTTAAAGCAACATAC
ACCTGGCGTGAACTGCCCTATTAGAAAGGGAAAACAGCCTGGGGATGTGG
CTCAGTGGAAATCACTTGCCAGGATATGTGAGGACCTGCGTGCCATCCTC
AGTACTACAAGAGGCAGGACACATATGTGTAACGGAGTCAACTTTTTAAC
AGTTGTGAGCCAGAAATGCTCTGTGCTGAACCTTGGAGACTCGTGTGAGC
ACAAGTGTCTTCTGCTTATGTTGACCCCCCACTTCATGGGAATTGTAGGC
CGGAGACCCAGTGACCTTTCTTGTGCGAAAATAAAGCTTGTAAGCCAGGG
AGGGGCCAATGTGCAGTCTCCCTGTGCTGTAACAAATATTCCTAAGAAAG
AGGACACAGGTCCATCTAATAGTGGCTTTGTTTTTGCAAAAGGTGGTAAT
TTCTACAGACAACTTCCCCCCCCTATGAAAAAATAAGCAATCCCCGTGAT
GCCACTCATGCCCTATAGCTGATTAATAACTAAAGATTCTTCACTCGTTG
TCTCTTACGCTGCGCCAACAGTTGCATTATATCATGATTGTCCTTTTCTC
ACCTCCTTCCCCTCCATATCCTATTCCCTATCCATTCTTACCTTTCCCCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_o16.b1 MSMg01no188_o16.b1 CHROMAT_FILE:
MSMg01no188_o16.b1 PHD_FILE: MSMg01no188_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:44 2005
         (224 letters)



>mm_chr2_34421353_34421976
          Length = 624

 Score =  426 bits (220), Expect = e-124
 Identities = 223/224 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagcggtgcaagtgtagggttgagagacaaagggatccctgggccttgggccaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gccagcggtgcaagtgtagggttgagagacaaagggatccctgggccttgggccaggcag 488

                                                                       
Query: 61  tccaacccaagctcagggtcagtgagaccttgcttcaaaagatgagggagagtgatgagg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccaacccgagctcagggtcagtgagaccttgcttcaaaagatgagggagagtgatgagg 428

                                                                       
Query: 121 aggcagaggggtgaagcactggcttcccacgcctctccatgggcaaggggatttacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggcagaggggtgaagcactggcttcccacgcctctccatgggcaaggggatttacacat 368

                                                       
Query: 181 acagacatacacatacagcccttgctatatgtttaagggttgtg 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acagacatacacatacagcccttgctatatgtttaagggttgtg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no188_o16.g1 MSMg01no188_o16.g1 CHROMAT_FILE:
MSMg01no188_o16.g1 PHD_FILE: MSMg01no188_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:44 2005
         (289 letters)



>mm_chr2_34394934_34395622
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttgtaattgcacagtttgtctgtattggtgtcagttctaatgttttatgtctagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttgtaattgcacagtttgtctgtattggtgtcagttctaatgttttatgtctagctt 260

                                                                       
Query: 61  tcttaaagcaacatacacctggcgtgaactgccctattagaaagggaaaacagcctgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttaaagcaacatacacctggcgtgaactgccctattagaaagggaaaacagcctgggg 320

                                                                       
Query: 121 atgtggctcagtggaaatcacttgccaggatatgtgaggacctgcgtgccatcctcagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtggctcagtggaaatcacttgccaggatatgtgaggacctgcgtgccatcctcagta 380

                                                                       
Query: 181 ctacaagaggcaggacacatatgtgtaacggagtcaactttttaacagttgtgagccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacaagaggcaggacacatatgtgtaacggagtcaactttttaacagttgtgagccaga 440

                                                            
Query: 241 aatgctctgtgctgaaccttggagactcgtgtgagcacaagtgtcttct 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgctctgtgctgaaccttggagactcgtgtgagcacaagtgtcttct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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