Query= MSMg01no189_c09.b1 MSMg01no189_c09.b1 CHROMAT_FILE:
MSMg01no189_c09.b1 PHD_FILE: MSMg01no189_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:03 2005
(312 letters)
>mm_chr2_62951000_62951711
Length = 712
Score = 487 bits (252), Expect = e-142
Identities = 298/326 (91%), Gaps = 22/326 (6%)
Strand = Plus / Minus
Query: 4 ggaattccattttcccttattagatgacattttactcaaacgcactttttcacagctggg 63
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 409 ggaattccattttcccttattagatgacattttactcaaaagcactttttcacagctggg 350
Query: 64 cttcgttttattt-gctttaacattaattgccctctgtgtcaaggcatcacttggctttc 122
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 349 cttcgttttatttggc-ttaacattaattgccctctatgtcaaggcatcacttggctttc 291
Query: 123 attgatggaacaaaataccttacacaaaaattttctgggaagaaaattcatttgactggt 182
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 290 attgatggaacaaaataccttacacaaaaatcttctgggaagaaaattcatttgactggt 231
Query: 183 aatttcagaggtgtttttttctttttt--------------------cactgatccaact 222
|||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 230 aatttcagaggtgtttttttttttttttttttttttttttctcttttcactgacccaact 171
Query: 223 ctttctaatccaactatagcaatgtggaaaatcatgccaagaaggtgagataaagaacag 282
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctttctaatccagctatagcaatgtggaaaatcatgccaagaaggtgagataaagaacag 111
Query: 283 tttctcaccttacagtatccagagag 308
||||||||||||||||||||||||||
Sbjct: 110 tttctcaccttacagtatccagagag 85
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_c09.g1 MSMg01no189_c09.g1 CHROMAT_FILE:
MSMg01no189_c09.g1 PHD_FILE: MSMg01no189_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:03 2005
(292 letters)
>mm_chr2_62871448_62872140
Length = 693
Score = 485 bits (251), Expect = e-141
Identities = 281/291 (96%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 1 caggacttgagaggattacattggtgaacaacacacacctgtatccttgccaatgaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacttgagaggattacattggtgaacaacacacacctgtatccttgccaatgaggtt 260
Query: 61 acagcccaaatcaaaactgtctgcataccaattaatgtccatacaactatgtaataaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagcccaaatcaaaactgtctgcataccaattaatgtccatacaactatgtaataaaat 320
Query: 121 aatgccagttccacaaaggtgaaatctgattggtcaggctctcatagcttatgtgggggt 180
|||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||
Sbjct: 321 aatgccagttccacaaaggtgaaatctgataggttaggctctcatagctcatgtgggggt 380
Query: 181 ccagggagagta-tacaaaggtgataaagagcccaaacatgacagagagacttgcattta 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 ccagggagaatagtacaaaggtgataaagagcccaaacatgacagagagacttgcgtttg 440
Query: 240 cttcactgtggctgtgtggctcctgggtatcccaatgtctttcaattattc 290
|||||||| |||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 441 cttcactgcggctctgtggctcctaggtatcccaatgtctttcaattattc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
