Query= MSMg01no189_e02.b1 MSMg01no189_e02.b1 CHROMAT_FILE:
MSMg01no189_e02.b1 PHD_FILE: MSMg01no189_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
(541 letters)
>mm_chr2_86498686_86499626
Length = 941
Score = 938 bits (485), Expect = 0.0
Identities = 524/537 (97%)
Strand = Plus / Minus
Query: 5 gaattcttttttcccctcagaaatctcctaggtgacgtttgtgtgagagaaaacactgaa 64
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 741 gaattcttttttcccctcagaaatctcttaggtggcgtttgtgtgagagaaaacactgaa 682
Query: 65 acagtcgtcaacttggtttaagccaactgaaggaggtacagaaaagcctttgtttggaga 124
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 681 acagtcgtcaacttggtttaagccaactgaatgaggtatagaaaagcctttgtttggaga 622
Query: 125 caggctgtcactaagatagaagcagatctttgatttctttacaagggaactgattgactg 184
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 cagactgtcactaagatagaagcagatctttgatttctttacaagggaactgattggctg 562
Query: 185 aacatttctgagtcccaattcggatgttttataataaatggttggtcagaaaggcaagtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatttctgagtcccaattcggatgttttataataaatggttggtcagaaaggcaagtc 502
Query: 245 cctagtgtataaccagtcccaaaacagaatcccctgctatgtacaggcagacaggcacca 304
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cctagtgtataaccattcccaaaacagaatcccctgctatgtaccggcagacaggcacca 442
Query: 305 gaattatgctggacaggtgaaacctctacttctcccagattaagatttattaaaccatta 364
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 gaattatgctggacaggggaaacctctacttttcccagattaagatttattaaaccatta 382
Query: 365 tgttttttcctgtataattaattcattaaattcttaaagaagcatatatattccttatga 424
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgttttttcctgtataattaattaattaaattcttaaagaagcatatatattgcttatga 322
Query: 425 ctggaatttggatgaactgaaaagtgtttaagcttaggtagtctttaaaccattcactgc 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaatttggatgaactgaaaagtgtttaagcttaggtagtctttaaaccattcactgc 262
Query: 485 caataacttttcacctcaaactatatatgaatgtattaacttgagacactgaatggt 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataacttttcacctcaaactatatatgaatgtattaacttgagacactgaatggt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_e02.g1 MSMg01no189_e02.g1 CHROMAT_FILE:
MSMg01no189_e02.g1 PHD_FILE: MSMg01no189_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:11 2005
(299 letters)
>mm_chr2_86305003_86305701
Length = 699
Score = 513 bits (265), Expect = e-150
Identities = 290/299 (96%), Gaps = 2/299 (0%)
Strand = Plus / Plus
Query: 1 agtcaccattgtaaagttgtgactcgccatcaggtttatgataaattctgttttgagtgg 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agtcaccattgtaaagttgtgactcgccatcaggtttatgagaaattctgttttgagtgg 260
Query: 61 aaatcattgcacagtcaatagatttcaagtaccatttggtgagtttttatcatctaaacg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aaatcattgcacagtcaatagatttcaagtgccatttggtgagtttttatcatctaaacg 320
Query: 121 tgcttaaataaattatcttcaaacattcaaatttattttgaaatatattaaaatatgtat 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttaaataaattatcttcaaacattgaaatttattttgaaatatattaaaatatgtat 380
Query: 181 gtatcttctgtaatctacacacacatacatgcaaacatgtggtatgaaatacacaattat 240
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct: 381 atatcttctgtaatctacacacaca--catgcaaacatgtgatgtgaaatacacaattat 438
Query: 241 gaatatttagttttgttccaataataacttaaatcagagaataccgtatttaactgcca 299
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 439 gaatatttagttttgttccaataataacttaaatcagagaataccgtaattaactgcca 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space: 200100
Effective search space used: 200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
