Query= MSMg01no189_i03.b1 MSMg01no189_i03.b1 CHROMAT_FILE:
MSMg01no189_i03.b1 PHD_FILE: MSMg01no189_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:30 2005
(670 letters)
>mm_chr2_44543383_44544452
Length = 1070
Score = 1212 bits (627), Expect = 0.0
Identities = 654/663 (98%), Gaps = 3/663 (0%)
Strand = Plus / Plus
Query: 5 gaattcagagaagccagaatccagagttgcataaaaaaggctttttgcttctccaaa-ca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcagagaagccagaatccagagttgcataaaaaaggctttttgcttctccaaaaca 264
Query: 64 tgtgcctgtgaagagaaaaactataaagggaattctactttccttatggatttctgcagc 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgcctgtgaagagaaaaaccataaagggaattctactttccttatggatttctgcagc 324
Query: 124 ctccctaagtatgaaacctgccaggtgccatgggacttccttagtccttaagtgtggcct 183
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 ctccctaagtatgaaacctgtcaggtgccatgggacttccttagtccttaagtgtg-cct 383
Query: 184 cacaattacaaaagatataaggagctcagagaggttaagtggacaagtccaaaagtcaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaattacaaaagatataaggagctcagagaggttaagtggacaagtccaaaagtcaca 443
Query: 244 caaacaatgagtagtgagtcacaaaggacaagagttagccaacatgcatgtccttagata 303
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaa-aatgagtagtgagtcacaaaggacaagagttagccaacatgcatgtccttagata 502
Query: 304 aattttatcactgtttattcatgagatgctaaaatggtgtagattcagagttaaagagga 363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 aattttatcactgtttattcatgagatgttaaaatggtgtagattcagagttaaagagga 562
Query: 364 atggccatgaggagtttgctttgttacttgaaggttgatagacatgggaggtctgccctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atggccatgaggagtttgctttgttacttgaaggttgatagacatgggaggtctgccctg 622
Query: 424 acctgggctatgaatctctgctaggcctgactgagacctatagtttcagctctgagcaat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acctgggctatgaatctctgctaggcctgactgagacctatagtttcagctctgagcaat 682
Query: 484 aaacctaggacccaagttcccaagccctaagtgaggtatctcacaccttcagggacacca 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 683 aaacctaggacccaagttcccaagccctaagtgaggtatctcacaccttcaaggacacca 742
Query: 544 ggttccactccaataggaagatgtcactattttcccctttctctgctgagcttcctttga 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 743 ggttccactccaataggaagatgtcactattttcccctttctctgctgagcttcctttta 802
Query: 604 aggcaagttcttccatcaattttaatgctggcaaatgtggtgctcactaactagacatac 663
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 803 aggcaagttcttccatcaattttaatgctggcaaatgtggtactcactaactagacatac 862
Query: 664 tgg 666
|||
Sbjct: 863 tgg 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no189_i03.g1 MSMg01no189_i03.g1 CHROMAT_FILE:
MSMg01no189_i03.g1 PHD_FILE: MSMg01no189_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:30 2005
(630 letters)
>mm_chr2_44575912_44576941
Length = 1030
Score = 1195 bits (618), Expect = 0.0
Identities = 627/630 (99%)
Strand = Plus / Minus
Query: 1 tttataacatgagcacaattcttcttaataaacgttagtactgagtaaacatttctggga 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 830 tttataacatgagcacaattcttcttaatgaacgttagtactgagtaaacatttctggga 771
Query: 61 tattggaaaagacaatttgtatggtgctgggcaccatgaccaagcatagcttagcactca 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tattggaaaagacgatttgtatggtgctgggcaccatgaccaagcatagcttagcactca 711
Query: 121 gccctttgacatttgtgcacactcccctcttttcacttcaagtggatgcagcttctggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gccctttgacatttgtgcacactcccctcttttcacttcaagtggatgcagcttctggag 651
Query: 181 aagcacttgcgatgattggaaagtcaggattgcattttgactgcttaatctataggaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aagcacttgcgatgattggaaagtcaggattgcattttgactgcttaatctataggaaca 591
Query: 241 tattggaatatttgtaaaggatgtgaggaaatgtgattgaaagtggacatcataattgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tattggaatatttgtaaaggatgtgaggaaatgtgattgaaagtggacatcataattgtc 531
Query: 301 tgcctacttgctgtattcacatgtagacaaataacccttatcactgaaagttgatatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgcctacttgctgtattcacatgtagacaaataacccttatcactgaaagttgatatgga 471
Query: 361 aatattaagtatagattataataattatcgtggaaccttttgaaaaccaagcttgtactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatattaagtatagattataataattatcgtggaaccttttgaaaaccaagcttgtactg 411
Query: 421 ttatctgaaaatctcgtgttttcattgtgagcctgcctagtgagacagctcagaacctgg 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 410 ttatctgaaaatctcgtgttttcattgtgagcctgcctagtgagacagatcagaacctgg 351
Query: 481 aacttgtctgtgtagaaactaattgtcagctcagtgtgcagaggctgttaaaacacctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aacttgtctgtgtagaaactaattgtcagctcagtgtgcagaggctgttaaaacacctct 291
Query: 541 gcaaccaggtctgccatgtccttgtgctcccaggtcgtcatcttctggagtgccccacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcaaccaggtctgccatgtccttgtgctcccaggtcgtcatcttctggagtgccccacct 231
Query: 601 ttcttcagggaggatgaaggcaactgaagc 630
||||||||||||||||||||||||||||||
Sbjct: 230 ttcttcagggaggatgaaggcaactgaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
