BAC Information

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BAC

Clone NameMSMg01-190E24
Chromosome2 (Build37)
Map Location 136,703,542 - 136,703,782
singlet/doubletsinglet
Overlap geneMkks
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
Downstream gene2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190E24.T7 (MSMg01no190_e24.b1)MSMg01-190E24.TJ (MSMg01no190_e24.g1)
ACCAG380701AG380702
length709752
length of high quality
(start - end)
655 (45 - 699)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no190_e24.b1 PHD_FILE: MSMg01no190_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:31 2005CHROMAT_FILE: MSMg01no190_e24.g1 PHD_FILE: MSMg01no190_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGGATGGCTGAGAAGCACCTGAAAAAGTGCT
CAGCATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTC
CATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCCGCAACACCTCTCCTGGGCAT
ATATTCTTTTTATTTCCCCCCCCCCCCGAAGGACACATACTCCACTATGT
TCATAGCAGCCTTATTTATAATAACAAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGA
ATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACGATCACAAAAG
AACTCAAATGATATGTACTCACTGATAAATGGATACTAGCCCAGAAACTT
AGTATACCCGAGATATAAGATACAATTTGCAAAACACGTGAAACTGAAGA
AGAACGAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGGACTACATAGCA
AAATGCCATGCCAAAAAGAAGAGGAGGAGGAGAAGAAATAATATTTAAAT
AGAAGAATGTAAATTTCAGAGATCTAAGAAGATGCATTTTTATCCTATAT
TTCATATTTTTAATAAGCTTGGTGGAGTCCCTTATACTAGCTAGGAATTA
ATGTTTGTTGGTTTGTTGATATTGTTTTAAGGGTCTCATCTTTGCTTATA
CAGNTTATATTTTTTATTTTTTATAAATATAGGAGCAACGCCTATTGGAT
CTCTTTTTTTGTAGTCTCCAAAACAAAACCCCAAGTGTGAAAGATGNGAG
TTNTGNNNGANNGGCCCCCAAAAAAAAAAAAAAACGGGGGGGGGGGGGGG
GGATTGTTTTTTTCTTTGTTTCTCTGCTTAATAATTGACACCTTTCTGTT
TAGGTTATTGAAGATAGGTGTTAATCACTGTTCTTACTTATTTATTAGAA
TTCCCACATTTATAGCGGATCTCTCCCCGTCCGCTTTGCTCTTCGTTAAC
TCTTCGGACTAATACTTTCTGGTATTTTTTATATTTCTTCTCCTTCCCCC
CCCCCTTGTATCTCTTTTATCTCACCCCTTGTTAACCCGTTTTGTCGTAA
TTACTCTTTTGGTCGCTTGTATGTTGTTTTTATGCTTGTTCATTTCATTT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_e24.g1 MSMg01no190_e24.g1 CHROMAT_FILE:
MSMg01no190_e24.g1 PHD_FILE: MSMg01no190_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:31 2005
         (242 letters)



>mm_chr2_136703342_136703983
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagccaggactacatagcaaaatgccatgccaaaaagaagaggaggaggagaaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggccagacaggactacatagcaaaatgccatgccaaaaagaagaggaggaggagaaga 382

                                                                       
Query: 61  aataatatttaaatagaagaatgtaaatttcagagatctaagaagatgcatttttatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataatatttaaatagaagaatgtaaatttcagagatctaagaagatgcatttttatcct 322

                                                                       
Query: 121 atatttcatatttttaataagcttggtggagtcccttatactagctaggaattaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttcatatttttaataagcttggtggagtcccttatactagctaggaattaatgttt 262

                                                                       
Query: 181 gttggtttgttgatattgttttaagggtctcatctttgcttatacagnttatatttttta 240
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 261 gttggtttgttgatattgttttaagggtctcatctttgcttacacagtttatatttttta 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)