Query= MSMg01no190_n15.b1 MSMg01no190_n15.b1 CHROMAT_FILE:
MSMg01no190_n15.b1 PHD_FILE: MSMg01no190_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:15 2005
(307 letters)
>mm_chr2_57634770_57635476
Length = 707
Score = 466 bits (241), Expect = e-136
Identities = 277/303 (91%), Gaps = 22/303 (7%)
Strand = Plus / Minus
Query: 5 gaattcttactattaatggactctatttgttgtgtataggaacaagcaacatggattcca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaattcttactattaatggactctatttgttgtgtataggaacaagcaacatggattcca 283
Query: 65 ggaaaatgttttgaaaagagtcctgagaggaagtctgtgcttctatggaagggtttttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggaaaatgttttgaaaagagtcctgagaggaagtctgtgcttctatggaagggtttttca 223
Query: 125 tgctgagaccccccactggagagagagagagagagagagagagagagagagagagagaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tgctgagaccccccactggagagagagagagagagagagagagagagagagagagagaga 163
Query: 185 gagagagagagagagacagagagagagagagagagagagccatgcaggatgcccctactt 244
|||||||||||||||| ||| ||||||||||||||||||
Sbjct: 162 gagagagagagagagataga----------------------tgcaggatgcccctactt 125
Query: 245 ctgccttcaattagattagagggaaggattcagcctaggagtgcgttttcaccagtgtga 304
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 124 ctgccttcaattagattagagggaaggaagcagcctaggagtgtgttttcaccagtgtga 65
Query: 305 atg 307
|||
Sbjct: 64 atg 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no190_n15.g1 MSMg01no190_n15.g1 CHROMAT_FILE:
MSMg01no190_n15.g1 PHD_FILE: MSMg01no190_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:15 2005
(290 letters)
>mm_chr2_57518336_57519025
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Plus
Query: 2 aatatcacaccatcgcagaatccgtctgtagctggtaaaaccatgcctcttctagatcac 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 aatatcacaccatcgcagaatccgtctgtagctggtaaaaccatgcctcttccagatcac 261
Query: 62 gaggcagatgatagtaaactgctgtgaagcagtctgatatcccaaacctgaggtcgaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 gaggcagatgatagtaaactgctgtgaagcagtctgatatcccaaacctgaggtcaaaaa 321
Query: 122 aatccccataatatttctgtgttttctaaaggaaccaaaattctagaattctccttcgag 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 aatccccataatatttctgtgttttctaaaggaaccaaaattctagaattctccttagag 381
Query: 182 agccttctcatagagtaatgtataacaaacattgactaggctaagaggcagataatgtct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agccttctcatagagtaatgtataacaaacattgactaggctaagaggcagataatgtct 441
Query: 242 gggttctccgtggaagtgactccagctgaaaatgaggcagtcagaa 287
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggttctccgtggaagtgactccagctgaaaatgaggcagtcagaa 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
