BAC Information

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BAC

Clone NameMSMg01-190P10
Chromosome2 (Build37)
Map Location 129,407,736 - 129,407,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190P10.T7 (MSMg01no190_p10.b1)MSMg01-190P10.TJ (MSMg01no190_p10.g1)
ACCAG381136AG381137
length737766
length of high quality
(start - end)
319 (46 - 364)235 (56 - 290)
definitionCHROMAT_FILE: MSMg01no190_p10.b1 PHD_FILE: MSMg01no190_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:24 2005CHROMAT_FILE: MSMg01no190_p10.g1 PHD_FILE: MSMg01no190_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAATTCATTGTTATTAATAGCTGAGTAGTACTCCGTTGTGTA
GATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTT
CTTTCCAGCTTCTGGGTATTATAAATAAGCCTACTATGAACATAGTGGAG
CATGTGTTCTTATTACCAGTTGGAACTTCTTCTGGATATATGCCCAGGAG
AGGTATTGCTGGATGTTCACTTTTCTGAGGAACCGCCAGACTGACTTCCA
GAGTGGGTGTACAAGCTTGCAATCCCACCAGCAATGGAGGAGTGTTCCTC
TTTCTCCACATCCTCTTTTTTACTCCGCCCCCACCTGAATTTTTGATCTT
AGCCATTCTGACTGATGTGAGGTAGAATCTCAAGAAATGTTTTGATTTGC
ATTTCCCTGATGATTAATGATGTTGAACATTTTTTCAGGTGCTTCTCAGC
CCTTCAGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGTACCCCATT
TTTAAATGGGGTTATTTGAATTTCTGGAGCCCAGCTTCTTGAGCTCTTTG
TATATATTGGATATTAGTCCCCTATCATATTTAGGACTGATAAAGATTCT
TTCCCAATCTTTCTGGTGTCCCTTTTGTCTTATTGACAGTGTCTTCTTGT
CTTACAGAAGCTTTGTTATTTTATGAAGCCCCATTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAAGAGCACCTCTCTCCACATCCGCTGAGAAACCAACTCTGAAGT
CTGTTTCCTGACCCTGTGGACCCCTGGGGGGACAATAGCAGAGACTGATA
GTCCTCCTTCCTGAACCTTCCTAATGCTGCACAGGTCATTTGGATCTTCT
CCATCTCCACTCAACAGTTCTGCAGAGTTTAGGCTTCAGAGCTGACCCCA
GCATCCCCAGGCCAGGAGGTAGGGGTAGGGTGGGGGTGTTNCTATTTTTT
TTTTTTTTTATCCTTTGCCCCCCCACAAAAGAAAGAGAATTTTTGGTAGG
TTCCCAGGACAGGTCCCCCAGAAAAATGAAAAGAGGAAAAGCCGTTTGGG
TTGTTGTTGTTAAAAAAAAAAAAAAAAACCGCCCGGGGTGTTGCGTCATA
TTACCCCTGTTCTCTCTTTTATTGTCAACTTGACAATGTATCTATTCTCT
ATTTTCTCCCCTTTTTTTTTTATTCCCCCTCTTTCCATTTATTTATTATC
CTTTTCACACGCCCACTCCCCTTTTTTCCCAATTAAATTCACAATTTTAA
TTTTCTTCAATCCCCAGCGTCCTCCCGTTTCTTTCTTCCATTCCTTCCCC
TTTACTTAAGCCACTTTTCCCGTTTCTTTTTTCTCTTTATATAGACGATA
GTAACACCTACCCATTATATATTTTCTCTCTTACCTTTTTAACCTTCCCA
CCCCCCCTCCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_p10.g1 MSMg01no190_p10.g1 CHROMAT_FILE:
MSMg01no190_p10.g1 PHD_FILE: MSMg01no190_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:24 2005
         (235 letters)



>mm_chr2_129407536_129408169
          Length = 634

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagagcacctctctccacatccgctgagaaaccaactctgaagtctgtttcctgaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagagcacctctctccacatccgctgagaaaccaactctgaagtctgtttcctgaccct 260

                                                                       
Query: 61  gtggacccctggggggacaatagcagagactgatagtcctccttcctgaaccttcctaat 120
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtggacccct-gggggacaatagcagagactgatagtcctccttcctgaacctttctaat 319

                                                                       
Query: 121 gctgcacaggtcatttggatcttctccatctccactcaacagttctgcagagtttaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctgcacaggtcatttggatcttctccatctccactcaacagttctgcagagtttaggct 379

                                                                
Query: 181 tcagagctgaccccagcatccccaggccaggaggtaggggtagggtgggggtg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcagagctgaccccagcatccccaggccaggaggtaggggtagggtgggggtg 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space:   141250
Effective search space used:   141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)