BAC Information

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BAC

Clone NameMSMg01-191C02
Chromosome2 (Build37)
Map Location 9,440,468 - 9,440,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191C02.T7 (MSMg01no191_c02.b1)MSMg01-191C02.TJ (MSMg01no191_c02.g1)
ACCAG381250AG381251
length743697
length of high quality
(start - end)
179 (36 - 214)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no191_c02.b1 PHD_FILE: MSMg01no191_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:37 2005CHROMAT_FILE: MSMg01no191_c02.g1 PHD_FILE: MSMg01no191_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGCA
AAATTAAATAGCAATAATAAATAGCAATCAATAATCAACAAGTACCGACT
TTATTTTCCTCCCTACAACCCCTTGTGTGCATGTGCCTGTGCGTGTGCGT
GTGTGCACGTGCACGATCATGTGTGTTTCCTTGAAGCATGGTCTCATTGA
ACCCAAGAACTCANGAAACTGCGCATTCTAATATTTTCATCTCAANNAAC
ATGACTATGATTTTGAGCTTAGATCCTCTTCCTATGTCTCCAGGCATTGA
AATGCATGTATGTGCCACCTGTTTGTCTTCAAATAAACTTTGCATGCCTT
TCCCGGGTTTATTTTTTTTCCCCCCCCCCCCCACCCCCCTTTTATTTTTT
TTGGGNNNAAGAGTCTTTTCATAAATCTTTTTGCTATCAAAAATAAAAAA
AAATTTTTTCCTGGGGTCCTTTCCCAAAGGCAAAACTTTCTTTTTNNNNN
NNNNNNNNAAGGAGTTTAGAGACAGAAAGGTNNCNNNCAACAGAACATCA
TCGTAAGATTTTNNTNCTATAAAGTTTTTAAATATTCTAATCCGACACAA
GGCCGATTTCGGTTTTTCTTTTCTCAAACCTTTTTAGTTTTCCTTTCTTA
AAAAATTTATAAACCTAGCTCTCCTATATCACATGTTTTCTTTCCATCCA
ATCTTTAGACCCCTTTCTCATCCCTACCTTCTTATTATTTCTC
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGTGAGAAACTGTGTCAAGCTAAA
AAGCAATATATATGTGGATACAGCTCTGTGGCACAATGCTTGGCCCGTGT
GCATGAGGTTCAACATTCAATCTCTTACAGATATAATTTAAAAACTATTA
ATGTGTCTACCTGGCACAGAAGCTCTCACAACAACCTTCACTGTTACCTA
CAATCTGTTGAACTGCACAGTGTCACTTCTGTGGGTGCTGCGCCTAGCAG
CAGCAACAACAATTATATAAATCATTAGGAAATCCATTAATTTTCTTTAA
TCCACTATTTTTTTTTTTCCCCCCCCCCCCAGGTTTTGTTTGTTTGTTTT
TGCTAGTAGCAAAATTATTGAACTAAGGAAATCCTGTTTCTCTTTGCTGG
TTGTTTTCTTCAATACCAACTCAAAGGGGAGGTTGAATCATATCTTATTC
AACCCCCCTCTCCAGTTATGGTAGGAGGCTCTGTCAGTCCTTATGGAATT
GACTAGATGGCTTTGAGACAGATGCTGCAATTTGAAAAACAATGCAAAAC
AAAGCTAAAAAGGTACATGCCCACCTGACAAACCCGGTCAGCAAGAACTG
ACGGCCCAAGGTGTCATGAAAGAGTCAAGTCCTCACCTCCGGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_c02.g1 MSMg01no191_c02.g1 CHROMAT_FILE:
MSMg01no191_c02.g1 PHD_FILE: MSMg01no191_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:37 2005
         (286 letters)



>mm_chr2_9440268_9440953
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgagaaactgtgtcaagctaaaaagcaatatatatgtggatacagctctgtggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tagtgagaaactgtgtcaagctaaaaagcaatatatatgtggatacagctctgtggcaca 423

                                                                       
Query: 61  atgcttggcccgtgtgcatgaggttcaacattcaatctcttacagatataatttaaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgcttggcccgtgtgcatgaggttcaacattcaatctcttacagatataatttaaaaac 363

                                                                       
Query: 121 tattaatgtgtctacctggcacagaagctctcacaacaaccttcactgttacctacaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tattaatgtgtctacctggcacagaagctctcacaacaaccttcactgttacctacaatc 303

                                                                       
Query: 181 tgttgaactgcacagtgtcacttctgtgggtgctgcgcctagcagcagcaacaacaatta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 302 tgttgaactgcacagtgtcacttctgtgggtgctgcgcctagcagcagcaacaacagtta 243

                                                     
Query: 241 tataaatcattaggaaatccattaattttctttaatccacta 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tataaatcattaggaaatccattaattttctttaatccacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)