BAC Information

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BAC

Clone NameMSMg01-191C10
Chromosome2 (Build37)
Map Location 164,179,411 - 164,179,693
singlet/doubletsinglet
Overlap genenone
Upstream geneJph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5
Downstream geneSlpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191C10.T7 (MSMg01no191_c10.b1)MSMg01-191C10.TJ (MSMg01no191_c10.g1)
ACCAG381263AG381264
length697700
length of high quality
(start - end)		312 (21 - 332)285 (57 - 341)
definitionCHROMAT_FILE: MSMg01no191_c10.b1 PHD_FILE: MSMg01no191_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:39 2005CHROMAT_FILE: MSMg01no191_c10.g1 PHD_FILE: MSMg01no191_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATCAGTCTCCCAAGTGTCA
CCAGTTAATTGCTTTTAGATAGTAACCAGACTTTCTACTATTGGAAGCCT
ACTGTTCTACTATTGGGAGCCTAAATCATGATCTGTCTTAGAGAAAGTCC
CATGGCTTCCAATATATTCAAACCAAGGGGCCTCTCTTCCCAATGATGGC
TGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACATGAGCTCTGTG
GGGTACTGGTTAGTTCATATTGTTGCTTCACCTATAAGGTTGCATACCCC
TTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCTTATGTTTCCCCCCGCCC
CCCCCCAAGTGGGTGAGTAGGGGAGTAGGGCGAGGGTAGGGCATAGAAAA
AAAATAAGATAGGCTTTGAGGCGCCATGAAGAAAATATCTAATATCAAAT
TTGGAACAAAAGATATTGTCTAACCAAATCCAAAGATCCTATCCCATTAT
AAATTCATTACACCCTTATATGGCTTCTCTCCAGAGACGCCAGAACTGAT
TCAAAGTATGTACCTCCGCCTTTTTATTCTATTTTGTTCTCCTTCTCCCT
TATCTACCTCATTCTCGTCTCTTTCCATGTAAAAATGTCCTTCTTATAAT
TTATAACAATACGTCAAACCTCCACTCTATTTCTGTTTTTCAATACG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGGCTTGGGCATGCTTGAACCTTCCAAATATCATGTTTTTATC
TGCAAAGTGGCAACAGGGACCGCTTTCTTACAACGTGTAGTGCACCAGAG
GTTGCATAGTGGTGCAAAGTGTGTGTGTGCTATACAGCTGTGCTTTACCA
GAGTGCATTCACACACCACGGCCACTTATTGCTACCCGGCGTTATGAAAA
TGCGGTGCATGTGTGTGAACGCACACACATGTGCAGTGTGCTTACTTGTA
TGTGTTTTTGAAGGACAGAGTAGGACACCAGGTGTCTTCTTCTTTCTCTT
CCCGCTCCCCCCTTGAGCCAGGATCTCTGTGCTGAACCAAAAGCCGACCA
ATCAAAAATGAATTCGCTGGCCGGCTGATACGCAGCTGTTCAGGTCTGCC
CATCCCCTTCCTCCGTTTACTGTGGTTACAGGAAAATGCTCCACACCCAG
CTTTTTATGCGGCTTCCGGGCATTTGAACTGAGTTCCGCTTGTGCAGTGA
ACGACGTGTTCACTACCCATCTCCCCAGTGTCCCGTCCCACTTCCAAGTT
CTACCTAAACAATATCTGCAGAATAATAGACGGATTCCAGTCAATGGGTG
CTCTGCAGCGAAGCTGCCATGATGTGCAGTAATTCGTGCTTCCTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_c10.g1 MSMg01no191_c10.g1 CHROMAT_FILE:
MSMg01no191_c10.g1 PHD_FILE: MSMg01no191_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:39 2005
         (285 letters)



>mm_chr2_164179211_164179895
          Length = 685

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcttgggcatgcttgaaccttccaaatatcatgtttttatctgcaaagtggcaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caggcttgggcatgcttgaaccttccaaatatcatgtttttatctgcaaagtggcaacag 424

                                                                       
Query: 61  ggaccgctttcttacaacgtgtagtgcaccagaggttgcatagtggtgcaaagtgtgtgt 120
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 423 ggaccgctttcttacaacgtgtagtgcaccagaggttgcagaatggtgcaaagtgtgtgt 364

                                                                       
Query: 121 gtgctatacagctgtgctttaccagagtgcattcacacaccacggccacttattgctacc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 363 gtgctatacagctgtgctttaccagagtgccttcacacaccacggccacttattgctacc 304

                                                                       
Query: 181 cggcgttatgaaaatgcggtgcatgtgtgtgaacgcacacacatgtgcagtgtgcttact 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 303 cggcgttatgaaaatgcggtgcatgtgtgtgcacgcacacacatgtgcagtgtgcttact 244

                                                      
Query: 241 tgtatgtgtttttgaaggacagagtaggacaccaggtgtcttc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtatgtgtttttgaaggacagagtaggacaccaggtgtcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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