BAC Information

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BAC

Clone NameMSMg01-191I17
Chromosome2 (Build37)
Map Location 115,292,162 - 115,292,446
singlet/doubletsinglet
Overlap genenone
Upstream geneAtpbd4, LOC100043219, LOC100043222
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191I17.T7 (MSMg01no191_i17.b1)MSMg01-191I17.TJ (MSMg01no191_i17.g1)
ACCAG381521AG381522
length739711
length of high quality
(start - end)
---285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no191_i17.b1 PHD_FILE: MSMg01no191_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:11 2005CHROMAT_FILE: MSMg01no191_i17.g1 PHD_FILE: MSMg01no191_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCGTAGTGGACCAGCACATTACGAGATCT
GACGGGAATTTACTATTTCCCCCCCCCCCCCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGGGGGTG
ATTACTCCTACGCTAGATACCTTGTATTCGAACCTCGCTCGAGAAGGCGC
AAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCATACACTTCGGTATATTCGC
TAACACCACACGATGCTTGTAGTTAACCCGCCCCCCCCCTCGGTATTATA
TTTTTTTCCTGGCTGCTTATTCATGTGAAGACTAAGTCATGGGACTTTGC
TGCATCATCGTCTTATTCCTCCCGTAATGACGACACCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCAGAAATATAAGTTTTGCGGCCT
ACATTATGCAAATGAGTCATAATACAATGCTATAGTAACCTGCTATTTAC
ACATATATATTAAGAATTGCTTAAATTAATTGGGAGAGGGAATAACAGTT
GTAATCCCTTTATGAAATATTCATAAAACTAGAGACCTTCCTTTTATGAA
TTTGTGACATTTAATACACTTTCACAGAATTTCACTGTCCAGAGACCCTG
AAAGGTAATTCAGGACGTGTTTCTGAGGTTACTGTCCATTTCCTTGTACT
GTTCTCAGCTCTTAGATCTCCAGCCAGACTCACACAGGCCGTGCTGCTCT
GCTTTCAATAATGAACCAGGTTTCCCCATCACAGTCAATTGGACATGACA
ATTACTTAACAAGAGTACCCTCGCAGACAGGCAGCCTTTCAACTTTTCAA
AACATACATTCTGGTTGCAGGAATAGGAAGTCCATCGACTTTTCCCAGCC
ACTGTGTGGGCTGTTTGGAGCTCCAGATTTTGGGAGCACCCTGCGTCTTA
TTGTAGGATCTAAAATGATTCATTTCTTAAATAAAAGGAGTAAGGATCTG
CGTGAACTGTTAGCGTTAGAGATTGGTGAGCGGGACACTCACTTAATGGA
TGTGTGTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_i17.g1 MSMg01no191_i17.g1 CHROMAT_FILE:
MSMg01no191_i17.g1 PHD_FILE: MSMg01no191_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:12 2005
         (285 letters)



>mm_chr2_115291962_115292646
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcagaaatataagttttgcggcctacattatgcaaatgagtcataatacaatgctata 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 485 catcagaaatataagttttgcggcctacattatgtaaatgagtcataatacaatgctata 426

                                                                       
Query: 61  gtaacctgctatttacacatatatattaagaattgcttaaattaattgggagagggaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtaacctgctatttacacatatatattaagaattgcttaaattaattgggagagggaata 366

                                                                       
Query: 121 acagttgtaatccctttatgaaatattcataaaactagagaccttccttttatgaatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acagttgtaatccctttatgaaatattcataaaactagagaccttccttttatgaatttg 306

                                                                       
Query: 181 tgacatttaatacactttcacagaatttcactgtccagagaccctgaaaggtaattcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgacatttaatacactttcacagaatttcactgtccagagaccctgaaaggtaattcagg 246

                                                        
Query: 241 acgtgtttctgaggttactgtccatttccttgtactgttctcagc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acgtgtttctgaggttactgtccatttccttgtactgttctcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)