BAC Information

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BAC

Clone NameMSMg01-191N10
Chromosome2 (Build37)
Map Location 144,305,297 - 144,305,498
singlet/doubletsinglet
Overlap gene6330439K17Rik
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552
Downstream genePolr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191N10.T7 (MSMg01no191_n10.b1)MSMg01-191N10.TJ (MSMg01no191_n10.g1)
ACCAG381708AG381709
length735734
length of high quality
(start - end)
325 (46 - 370)202 (447 - 648)
definitionCHROMAT_FILE: MSMg01no191_n10.b1 PHD_FILE: MSMg01no191_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:35 2005CHROMAT_FILE: MSMg01no191_n10.g1 PHD_FILE: MSMg01no191_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATAGACACAACAGGACTGATGCACACATGAACTCAGAGACTGCG
ACAGCATGCACAGGGCCTGCCTGGGTTCAAACACGACAAAGTCTCAGCAC
GGAGAAGGGACAGTGAATAAGCAGCCCCACCCTAAGCAAGAGGCTATTTG
CAACTGAAAAAATTTTGCAAAGGAAAAATCTTATCTTTTCTAGTAGAGTG
TCATTGGGTATGTCAACTTCATTCCAGGAAGTAGTTGGCAACACAAAATA
TACATATAAAACATACATGTGTGTGCGCATGCATGCATATATATTATGAC
AGAGAGAGAGTTTTTTTCTTTCTCTGCAGTGGGCTTGCCTAAGGAGGTTT
TCCTAATACTTACAGATGACAAAGGGCAACTACTCTGGCAAGAAAGTAAA
CCAGGTAATGGTTGTAAGTCCAACTTAAGAGCCACAAAAGAACCACCTGT
ATGAAAGCTCAAATTCCCAATTCTAAGAGTCACCTTTTGATGCGGAAGGC
AAAGACAATGTCATCTGGTAACTAATTACATGGGTGCTGTTCATTACCTC
TGCTTCAAGAGCAAGGTTTGTCTTAGGCTGAGTTCTATCCCTTAACCACC
AGCAGTAGATCCCAGGCAAACTGTCAGTCAATTTGCTCATCACTGCGACC
AAACGCCTGACAGAACANACCTATAGGAAGGAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATTGCCCAACTGCCATCCCAC
CATGAACAACAAATGTCCTACACTGGGATGATGGCACTGAGTATAAGTCA
CAGGAAAGGAGAATGAGGACTCTCATGAACACAGCTACGATGAACGAGGC
CCCCAGATGTTTAAGACTTCTCCCCACAGCAGGAGGAGCCACCTTTTCAT
GGCAGGAAAGCAGGCTGAAGGTAAATGGCCACAGAGCAGGGATTCTGTCT
AGCCTCATGGACAGTATTTTTTTTCACATGTGCTTGCCTACATGATTCTT
TGCTATAAATCNGTCCGAGACCGATGCCCGGGAAGCTCTTCGCTAGTCAT
TTACCCCATTTGCATACAANGTATNAAAAACAGGCGGCAGGCGCAAACCA
GGCTGATCTCTGCAGAGAGGCCCGTTCTCATGGCACTCACTTCATCCAGC
AGCTGTTCCAGCACAGACAGTCTTCCTTTCCCTGAGGAGCCAACTTCCTC
CAGCAGGAGTTTGTTTTCAGGCTGCAGGATGACAGAATGAGGTCATCTTC
ATCTTCTTTGTGCATCTGTGTTGTAGAGTCCCAGCCCCAACATCCAAGGC
ATAATCCCCCAGTGCCACCCCCTTCCCCAGCTTAGCAGCCACATTCTCTA
CTGAACCACACGGATGGGTGAGTGCTGACAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_n10.g1 MSMg01no191_n10.g1 CHROMAT_FILE:
MSMg01no191_n10.g1 PHD_FILE: MSMg01no191_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:35 2005
         (202 letters)



>mm_chr2_144305097_144305698
          Length = 602

 Score =  383 bits (198), Expect = e-111
 Identities = 201/202 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaggctgatctctgcagagaggcccgttctcatggcactcacttcatccagcagctgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 accaggctgatctctgcagagaggcccattctcatggcactcacttcatccagcagctgt 260

                                                                       
Query: 61  tccagcacagacagtcttcctttccctgaggagccaacttcctccagcaggagtttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagcacagacagtcttcctttccctgaggagccaacttcctccagcaggagtttgttt 320

                                                                       
Query: 121 tcaggctgcaggatgacagaatgaggtcatcttcatcttctttgtgcatctgtgttgtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggctgcaggatgacagaatgaggtcatcttcatcttctttgtgcatctgtgttgtag 380

                                 
Query: 181 agtcccagccccaacatccaag 202
           ||||||||||||||||||||||
Sbjct: 381 agtcccagccccaacatccaag 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)