BAC Information

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BAC

Clone NameMSMg01-192E14
Chromosome2 (Build37)
Map Location 158,228,516 - 158,228,888
singlet/doubletsinglet
Overlap genenone
Upstream geneSrc, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik
Downstream geneB230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192E14.T7 (MSMg01no192_e14.b1)MSMg01-192E14.TJ (MSMg01no192_e14.g1)
ACCAG382012AG382013
length1,2391,291
length of high quality
(start - end)
310 (44 - 353)375 (70 - 444)
definitionCHROMAT_FILE: MSMg01no192_e14.b1 PHD_FILE: MSMg01no192_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:26 2005CHROMAT_FILE: MSMg01no192_e14.g1 PHD_FILE: MSMg01no192_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNGGGCAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCTCTTCTAGTGTGTCTAAAGACAGCTACGCTGTACTCATATACATA
AAAAGGGAATAAATATATCTTTTTTGTTTGTTTGTTTTCTAGACAGGGTT
TCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACTAGGCTGG
CCTCGAATTCAGAAACTCACCTGCCTCTGCCTCTGCCTCCCAAGTGCTGG
GATTAAAGGCGTGTGCCACCACCACCCAGCGAATAAATATCTCTTTAAAA
AATAAAATAAATTGCTTAGCACTGTACTGCCTAGAGCGTGCATTGTGTGG
CATAGTCCAGCCAGGATCTCCCGTCTGGTCTCCAGGCTGGCTTCTCGTCA
TTCATTCACATTTAAGCTTAGTTGTGAGTTGGTTGGCCTTTAATTCTAGT
GTTTTTTTTTCCCCCCCCCCCTGGATTATTGTGATATAGAAAAAAAAAAG
GTGTACTTTGTAAGATAGACCCTATCTCATACAAATAAAAAACTTTATTA
TTGGTGTGCGCGCATGCCTGTGTGCGTGTGTGTGTGATGTCGTGTGTGAT
AATTCTTTTTTCAATTCTGATCTCCCTTTTTTTACTGTGTTATCTTATCT
TCTACATTTTCTTTTCTTCTTTTTTTTTCTTTCTTTTTTTTTATTCTCTT
ATCTAGTTTTTTCTTTTCTTCTTTCCTTTATATTCTTTTTATTATTTTTT
TTCCTTTTCACTTAAATCTTTTTTTTCTTTTTTTTCTTCTTATCTCATTT
TACTTTCTTTTTTATTTCTTTTTTCTTTTTTTTTTTTTCTTTTTTTTTCT
CTTTTTTTCTTACTTTTTCCTTTTCTTAATCTTTTTCCTCTTTTTTATAT
TTCTTTCTTTTCTCATTTTTTTTTTCTTAACTTTATTTTCCTCTAATTAT
CTATCTCTATTTTTTTTTTTTCTTTATTTTTTATTTTTATCTTTTACCTT
TTTTTTTTCTTCTTCTTCACTTTTCTTTCTCTTTTTTCATTCTTTTTCTT
TACTATTCTTTTTTTCTTTTCCTTTATCTTTTATTTTATTTTATTTTACC
TTTCTTCTTTTTTTCTCTCCATTCTTTTCCTTTTTCATTATATTCTATTT
CTTCAATTACTTATTTTACCTCTTTACTTATTCATGTTCTAANCTTTCTT
ATTATTTTANTTATTCTCTTCCTATTTCTTTTTATCTCT
NNCCTCTGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGACTCTGTGATACAAGTGGCCCTCTTCAA
AACCTGAATTTGAGGCCCTTTCCTTTTCCTCTTCCAGTGACGGCCCTTAG
AGGCACTCAGAATGGCCCAATGTTTGAATTCTGTCGTAGGCGCTCTTACA
GTCCAGACTCTCAAAGCCCTGACAACAGGACTGTTCACCTTTATACCAAG
AAGTTTGGAGAAGCACCTAAATCCGCACGTGGTGTGTGCCCAGGCAGACT
ACAAGGGGTTCGTGCTGTGAGACCTAAAGTCCTTATGATTATCTAACACC
AAAAAAAGCATGCCAGCTGGGTCTATGGTGGTTCTGTGTAAGCCGAGTTA
AGTCTGTGACAGGATCTAGAGGGCTGTCCTTACTGAGGTGCAGAAAAATG
TTTTTTTACCCGCCCCAGGCACAAGCACAGATTCCGGCAAAAAAATGAGG
AAGCAGCTTTCTTAATAAAAATCAAGGCTTGGTCAAAAAAAAAAAAAGGA
AAAAAGAAAGAAAAAGGAAAACCAACCTGGACTTGAGCTTTATGGGAAAG
GATAGTCCCAGCCTTGGCTGTTATCTGACCTGTTGCAGCCCAGATGGTGT
GCCCCAGAGATCTTTTGCCAATGTGGGCTTTTGGCCTATGTGCATGCAGG
CAAGCCCCGACTCTTATGTCAGACTGTCCTCCCAGAACAGCAACTCTTCT
GTCAGTCTGCTCAGGCTGCTATGACAAAACCCCACAGTTGGGTACCCTAT
TTATTTCTCAAAGCCGGGAAGCCAAAAATCCAAGTTCAAGGTGGTTGGCG
ACTCAGATTTGATGAGGGCCCTATTCTTGGTTTGCCCTCCCTGTGGGCCT
GCCTTGGTTAAAGGTAAAAAATTCTGCTGCCTCTCCCCTTCTTATAAAAA
CCTTAACCTCTTATTTATCTTCCCCCCTCCCTTGTTCAATTAACCTAATT
TTCTTTCTTCAATGTTCGGTTCTTCAACTTCTTTTTTCTATCCCCCTTTT
ATCTTTTCCTTCACTCTCTTTATTTTTAATATATCTCTTTCTTATCACTA
ATTTTCCTCCCTCTTTATCACTCTTCTTCTTTCACTTTTTTCTCCTTCAC
TTTTATAACTATTTTTCTTTATCTCTTCTTCCTCCTTCTCCGATTACCTC
TCTATTTCCTCTGTTCTGTTCATTTTTCTTATCTTATCTTTGCATTCCTT
TCTCTCTTATTAAATACTAGCCTTTTATTCTCTTACTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_e14.g1 MSMg01no192_e14.g1 CHROMAT_FILE:
MSMg01no192_e14.g1 PHD_FILE: MSMg01no192_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:26 2005
         (375 letters)



>mm_chr2_158228314_158229088
          Length = 775

 Score =  667 bits (345), Expect = 0.0
 Identities = 366/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   gactctgtgatacaagtggccctcttcaaaacctgaatttgaggccctttccttttcctc 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gactctgcgatacaagtggccctcttcaaaacctgaatttgaggccctttccttttcctc 516

                                                                       
Query: 63  ttccagtgacggcccttagaggcactcagaatggcccaatgtttgaattctgtcgtaggc 122
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttccagggacggtccttagaggcactcagaatggcccaatgtttgaattctgtcgtaggc 456

                                                                       
Query: 123 gctcttacagtccagactctcaaagccctgacaacaggactgttcacctttataccaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gctcttacagtccagactctcaaagccctgacaacaggactgttcacctttataccaaga 396

                                                                       
Query: 183 agtttggagaagcacctaaatccgcacgtggtgtgtgcccaggcagactacaaggggttc 242
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 395 agtttggagaagcacctaaatccacacgtggtgtgtgcccaggcagactacaaggggttc 336

                                                                       
Query: 243 gtgctgtgagacctaaagtccttatgattatctaacaccaaaaaaagcatgccagctggg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 335 gtgctgtgagacctaaagtccttatgattatctaacaccaaaaaaagcatgcccgctggg 276

                                                                       
Query: 303 tctatggtggttctgtgtaagccgagttaagtctgtgacaggatctagagggctgtcctt 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 275 tctatggtggttctgtgtaagccgagttaagtctgtgacaggatctagagggctttcctt 216

                        
Query: 363 actgaggtgcaga 375
           | |||||||||||
Sbjct: 215 attgaggtgcaga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)