BAC Information

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BAC

Clone NameMSMg01-192I10
Chromosome2 (Build37)
Map Location 40,067,753 - 40,068,159
singlet/doubletsinglet
Overlap genenone
Upstream genePpp6c, Vmn2r-ps2, Ppia-ps2_560.1, LOC100042604, Magmas-ps
Downstream geneLOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192I10.T7 (MSMg01no192_i10.b1)MSMg01-192I10.TJ (MSMg01no192_i10.g1)
ACCAG382175AG382176
length1,2701,283
length of high quality
(start - end)
417 (32 - 448)382 (73 - 454)
definitionCHROMAT_FILE: MSMg01no192_i10.b1 PHD_FILE: MSMg01no192_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:00 2005CHROMAT_FILE: MSMg01no192_i10.g1 PHD_FILE: MSMg01no192_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACACTGGNCCTATACATCCTAAGGGAGAGGATCCGCGGAATTCTAT
TCTTACAGAGTTCCTGAGATTTCTTTCCAATACTTACATAGAAGAGTTTT
CAACTACCTGAAACTCAAGCTCCAGTGTGATTCAATGCCCTCTTCTGACC
TTTGCAGACATCTGCATTCACATGCACAAACACTCAGAGCCATAGGTATA
CACATAATTTTTAAAAGTTATATATAAAAACACAAGGATGAGTTTTAGAT
TGATTCAGCATTATGTCTTTGTTGCTTTCAAAATTAGTTTTCTTTCATTT
CTTTCCTAACAGTAATTTAAATTTTAATTGTTTTTTTATTTGTAGTGTTT
CCTCCACCACTTTTTCATTCTTCAATTTGATATGTAAATTGTATTCATGG
TTCAGATAAACCTTTGAGATCCACAGTTTGGCAAAAAGGAATGTCAATTT
TTTTATCCCCCCACTGCAATACTTTTCTTTCTGTAAAAAAAATAAGTGGC
ATGAGCGAAACTGACCTTGGGAGGAAAGGGTTTCTTTAACCTTAAACTTT
CAAGTAAAATTGAGGGGAATCAGGGCTTGTGCTTGAGGCAGGAACTAAAG
CAGAAATCGTTAGAGTGCTTATTGGCTTGCCCAGCTTCTTCCTTTATACA
GCCCCATTGCTGCTCAGGAATCACACTACCTACAGTGATCTAAGCCTTGC
TACATGAATTTTCAATCACAAAAATGTCTTACAGGGTTGCCTGCAGGCTT
GTCTGATATAAGCAATTCCAAAGTTGATGTCACCCCCTTCCTAGATTATT
GTAGCTACTGTCAAGTTAAAAAAAACAAATCAGTATAAGTGATGCCTTGT
CTGCTTAAACACATATTACTATTCAAGCATCTATTTTTCTTCCTGTTGGT
CCCCCATGTCTCTCATAAATGCTAAAAAAAAAGGCAGTTCATCTTTAATG
GTTCTAATCTTTAAACTTTCTATATTTATTTGTTCCATTTCCTTTTTTTA
TAAAATCCCAACTCCCTAAAGATATCTTCTCTTTTTATAATACCTAATTT
TTTTTTCTCCTACTCAAACATCTCTACTTTTTTTTATAACTTTTAATCAT
CCCACACTTCACTCCTTTCTCATCTTTCATTACTTGTTCTTTCCCTCTCA
CATTTCTAAATTTAATCCCTCTCTTTTCTCTTATCAATAGAGTATTTACT
ACTCTACTACATTCTCTGTAACTCCCCCATCTACACGCTCTCTTAATTCC
TCTCTATCATCTTACTTCTC
NNCCTATGACGAGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAACATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAATACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGTTTTTTTTCTCCCCCCCCCTCAACAGAGGAATGGATACAAAAAAAGA
GGGACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
AACAAGGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCC
CAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAA
CTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATT
TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG
AGATGAAAGGATGGACCATGTAGAGACTGCCATATCCCAGGATCCACCCC
ATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTA
TTGAAAGGACCCAGATGTACCTGCCTCTTGTGACACTATGCCGGGGCCCT
ATAAAAACAAAAGGGAATGCTTCCGGCCGCCTAAGGAATGTATCCAGGGC
CCCCCAGGGAGGAATTTAATAATTATCCTCGGTACTTACGGAATCTTCCC
CCTTTATGTGATAAACTTTTTTAATAACTGATTCCCCCTAACTTTTTTTC
TACCTTTATTATTTAAAAAGTCCATCCTCTCCCTCCCTAAAAAACCCCCC
TATNTCCTCCTTATATTTCCCTCCCCTCATCATCTCTTCCAACTTATACA
TTTTTCCTCTTATCTCTTTCCTCTCTCATCTTTCCTTTCACTTTTCCTAT
CTCTCCACTTTTGCCTTCTCCCTTCCCCTAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_i10.b1 MSMg01no192_i10.b1 CHROMAT_FILE:
MSMg01no192_i10.b1 PHD_FILE: MSMg01no192_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:00 2005
         (417 letters)



>mm_chr2_40067543_40068359
          Length = 817

 Score =  727 bits (376), Expect = 0.0
 Identities = 400/408 (98%), Gaps = 2/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctattcttacagagttcctgagatttctttccaatacttacatagaagagttttc 70
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 211 gaattctattcttacagagttcctgagatttctttccaatacttacatagaacagttttc 270

                                                                       
Query: 71  aactacctgaaactcaagctccagtgtgattcaatgccctcttctgacctttgcagacat 130
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 271 aactacctgaaactcaagctccagtgtgattcaatgccctcttctgacctttgcggacat 330

                                                                       
Query: 131 ctgcattcacatgcacaaacactcagagccataggtatacacataatttttaaaagttat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 331 ctgcattcacatgcacaaacactcagagccataggtatacacataattttttaaagttat 390

                                                                       
Query: 191 atataaaaacacaaggatgagttttagattgat-tcagcattatgtctttgttgctttca 249
           |||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 391 atataaaaacacaagggtgagttttagattcatat-agcattatgtctttgttgctttca 449

                                                                       
Query: 250 aaattagttttctttcatttctttcctaacagtaatttaaattttaattgtttttttatt 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaattagttttctttcatttctttcctaacagtaatttaaattttaattgtttttttatt 509

                                                                       
Query: 310 tgtagtgtttcctccaccactttttcattcttcaatttgatatgtaaattgtattcatgg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 510 tgtagtgtttcctccaccactttttcattcttcaatttgatatgtaaattgtattcacgg 569

                                                           
Query: 370 ttcagataaacctttgagatccacagtttggcaaaaaggaatgtcaat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttcagataaacctttgagatccacagtttggcaaaaaggaatgtcaat 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)