BAC Information

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BAC

Clone NameMSMg01-192K16
Chromosome2 (Build37)
Map Location 111,202,801 - 111,203,189
singlet/doubletsinglet
Overlap genenone
Upstream gene1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282
Downstream geneOlfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192K16.T7 (MSMg01no192_k16.b1)MSMg01-192K16.TJ (MSMg01no192_k16.g1)
ACCAG382271AG382272
length1,2641,295
length of high quality
(start - end)
424 (27 - 450)382 (71 - 452)
definitionCHROMAT_FILE: MSMg01no192_k16.b1 PHD_FILE: MSMg01no192_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:20 2005CHROMAT_FILE: MSMg01no192_k16.g1 PHD_FILE: MSMg01no192_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAGCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTC
TGAGAATTCCATACCCCATTTTTAAATTGGATTATTTGGTTTGTGGATGT
CTGTACTCATTTGCTCTTTCTCTAACCTGCCAACTTCCCAATAATGACAC
AGAGACCTTCTTTTTTTTCTTCTTCTTTTTTTTAATTATAAAAGTTTGGA
CTTAGCTTGGCAGACCCTCAGCTAGCTCATCTAAGTAAACCTGGCGATCA
AGCACTGTCCCACCATGTCGCTTGTTAGTTACCTCCCCTTCAGTACTGGT
AACCACTTCCTTTCTCCAATGTGGTTGGTGAAATCACTTGCTTCTGTGTC
TGACTAGCAAATCTCCCACATCAGAGTCTTTCCCAAAGTTCTTACCTTTC
CTGAAAATCACATTTCACATTAATGCTATTCTTGACAGATTGAATTTTTT
TTTGCCCCACCCAGTGCATGTTTTATTTTTGACTTAAAAAAGGGACTGTG
GAGGGTAGATATACATACTGAGTTCATTAACATTTAAATAATGACTCAAT
AATATAGATATGATTAATGCATTATTTACTGTAAAAAGTGTACACATATG
GAAGTAAAATATGACAACCAATGCTAATGCCAACACATAACTTCTACTAA
AATATTTTTCTATAAAAGAAGATACCGTTCTTAGCACACTATTTCACTTA
AACATCACAAAATTTTCTACTGCTGAACATTTACATCAATGTTATAGATA
AGAGACCCTGAATTTTAGAGATTTGGAGTGTGAAAGTCTTATAGTTAAAA
ATATATTAATTCATATTCCTAATTATCAAGCTATGTTTCTCAAATGTTAC
ACCTTTAAATATATGCTTATGAATTTTTGAAAAGATCTCCCCTTAAAATT
ATATCATTCCACTTTCCCTAAATTGGTAAAAATTGCCCTCCCCCCCTTGT
GTTCCTTTTTTTTATCTGTTCCCCTTTTCCTCACAAAATTTCTTTTATTA
TAATTATACTCACTTACTCCTTGAATTAATTTTTTTCTAACTATTTCTTA
TCTCTTCTTTTTTTATAACTCTCTTTCATTCATAACTTATCTTCTCTCTT
TCTTATTTCCTCCTCTATTTATCCTTCCTTCTTCATTTTTTTCAATTCTA
TTTTATTTTATTTTACCTTTCTTTCTTATTTTTTTCTCTTTATTTNTTTA
TCGTCTCTTCATACTTTCTTTATCTCATACTATTTCTAATTCTTTTCTAT
CTTCACTATATTCN
NNCCTCAGATGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGGGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAATCAG
TCTGGTGGTTCCTCAAAAATTGGACATAGTATTACAGGAGGATCCAGCAA
TACCTCTCCTGGACATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GATTTTTTTTCCCCCCCCCTCAACAGAGGAATGGATACAAAAAAAGAGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGAT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCACAACCTAGGATACCCCAGATATTAGATACAATTTCCTAAAC
ACTTGAAACTTCAGAAAGATGAAGACTGAAGTGTGGAAACTATGCCCCTG
CTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAAACAAAGTT
TGGACCTGAAATGAAAGGATGGACCTTGTAAAAACTGTCCATATTCGGGA
TTCCCCCTCATAATCACCTTCTAATCGTTACTCCATTGTTTACCTTACCT
AAATTTTTTCGAAGAGATCCTAATTTTTTTGTCTTTGTTTAAAAATTCTC
CCTTCCTTATCATACCATAATCGGTGTCTCCTTACATCTTTTTGATATCA
TTCTGTTTCTTCTCCTTTTGTATTATAATTTTACATATCATCATATCTTT
TTTTTTTTTTTCTTTATCTTTCGTTACCTTTCTCTATATAACATTCTCCT
TTTCCTATCCTTCTTTCTATCTTATTTTATTTATCATCTATATCCTTCTC
ATTCTTCTTTTAATTTTCTTCTCTCTTTATTTCTCTTCTTACTTCTTTAT
ATTTTCGTTTTCATTACTTATACTCTTACTTATTTTACTTCATTTTCATT
ATATNTTTTCTCTTCTCTNCATTTTCACTTCTCTATTTCCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_k16.b1 MSMg01no192_k16.b1 CHROMAT_FILE:
MSMg01no192_k16.b1 PHD_FILE: MSMg01no192_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:20 2005
         (424 letters)



>mm_chr2_111202574_111203397
          Length = 824

 Score =  549 bits (284), Expect = e-160
 Identities = 370/410 (90%), Gaps = 24/410 (5%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctctgagaattccataccccatttttaaattggattatttggtttgtggatgtct 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gaattctctgagaattccataccccatttttaaattggattatttggtttgtggatgtct 287

                                                                       
Query: 77  gtactcatttgctctttctctaacctgccaacttcccaataatgacacagagaccttctt 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 288 gtactcatttgctctttctctaacctgccaacttcccaataatgacacagagacctt-tt 346

                                                                       
Query: 137 ttttttcttcttcttttttttaattataaaagtttggacttagcttggc--agaccctca 194
           ||||||          |||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 347 tttttt----------tttttaattataaaagtttggacttagcttggctcagaccctca 396

                                                                       
Query: 195 gctagctcatctaagtaaacctggcgatcaagcactgtcccaccatgtcgcttgttagtt 254
           ||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||
Sbjct: 397 gctagctcatctaagtaaacctgaccatcaagctctgtcccaccatgtggcttgttagtt 456

                                                                       
Query: 255 acctccccttcagtactggtaaccacttcctttctccaatgtggttggtgaaatcacttg 314
           ||||||||||||||||| ||| ||| ||||||||||| ||| || ||||||||||||   
Sbjct: 457 acctccccttcagtactagta-ccagttcctttctcctatg-ggctggtgaaatcac--- 511

                                                                       
Query: 315 cttctgtgtctgactagcaaatctcccacatcagagtctttcccaaagttcttacctttc 374
                |||||||||| |||| ||||||||| |||| |||||| |||||||||||||||||
Sbjct: 512 -----gtgtctgactcgcaagtctcccacaacagactctttctcaaagttcttacctttc 566

                                                             
Query: 375 ctgaaaatcacatttcacattaatgctattcttgacagattgaat-tttt 423
           |||||| ||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct: 567 ctgaaagtcacatttcacattaatgctattgttgagagattgaatatttt 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)