Query= MSMg01no192_p06.b1 MSMg01no192_p06.b1 CHROMAT_FILE:
MSMg01no192_p06.b1 PHD_FILE: MSMg01no192_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:03 2005
(417 letters)
>mm_chr2_54850654_54851471
Length = 818
Score = 607 bits (314), Expect = e-178
Identities = 377/404 (93%), Gaps = 12/404 (2%)
Strand = Plus / Minus
Query: 16 gaattctc-actgaggaatctcaaatggcctagaagcatgtaaggaaatattcaaattcc 74
|||||||| ||| |||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct: 666 gaattctcaactaaggaatctcagatggcctagaagcatgtaaagaaatatccaaattcc 607
Query: 75 ttagttatcatggaaatgcaaatcaaaatgaccctaagattccaccttacgccaataaga 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttagttatcatggaaatgcaaatcaaaatgaccctaagattccaccttacgccaataaga 547
Query: 135 atggctaagatcaaaaactcaggtgacagtagatgtcactgataattttaaatacggaca 194
||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||
Sbjct: 546 atggctaagatcaaaaactcaggtgacagtagatgtcaccgttaattttaaatatgggca 487
Query: 195 agacatcataaacacaaccatctgataacattttcagttgaagtttaaagctcacaatca 254
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 486 tgacatcataaacacaaccatctgctaacattttcagttgaagttaaaagctcacaatca 427
Query: 255 tttcagactactttttaaatttttcatgaaatattaccactttttttgtttgttttttgt 314
|||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 426 tttcagactactttttaaatttttcatgaaatattaccacctttttt----------tgt 377
Query: 315 aaaactcattttatgctatggcatctcatctacaccaaactttattgtctgatttttaca 374
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 aaaactcattttatgctatggcatctcatctgcaccaaactttattgtctgatttttaca 317
Query: 375 aacatcca-gttgtgactaataaggctgatgggcaaaacactgc 417
|||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 316 aacatccaagttgtgactaacaaggctgatgggcaaaatactgc 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_p06.g1 MSMg01no192_p06.g1 CHROMAT_FILE:
MSMg01no192_p06.g1 PHD_FILE: MSMg01no192_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:03 2005
(379 letters)
>mm_chr2_54667986_54668764
Length = 779
Score = 694 bits (359), Expect = 0.0
Identities = 374/379 (98%)
Strand = Plus / Plus
Query: 1 ttagtattgagaacacaactcacttgaatgccctacttgaaacataacaatgaaaaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagtattgagaacacaactcacttgaatgccctacttgaaacataacaatgaaaaaagt 260
Query: 61 actatttctggagggaattacatctggctacatatttttaaaccagcacagtatatttga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actatttctggaggggattacatctggctacatatttttaaaccagcacagtatatttga 320
Query: 121 tgggaaagtaaaattgtttaaattaggggaaacaaaggtgaacaacagtatcccctaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaaagtaaaattgtttaaattaggggaaacaaaggtgaacaacagtatcccctaagt 380
Query: 181 ttatgttttaattttatgcatcacatgttccattccagtttaaacatattgactttaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgttttaattttatgcatcacatgttccattccagtttaaacatattgactttaatg 440
Query: 241 acatcaaatgatattatacatacgttctcacagttgttaacatcatgaattttattggtt 300
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gcatcaaatgatattatacatatgttctcacagttgttaacatcatgaattgtattggtt 500
Query: 301 attctcactctgattattcccttatatactcaaagctttagaattacctaagttaaaaaa 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 attctcactctgattattcccttatatacacaaagctttagaattacctaagttaaaaaa 560
Query: 361 taactcgaagaattagcct 379
|||||||||||||||||||
Sbjct: 561 taactcgaagaattagcct 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
