BAC Information

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BAC

Clone NameMSMg01-194A11
Chromosome2 (Build37)
Map Location 143,063,319 - 143,160,796
singlet/doubletdoublet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194A11.T7 (MSMg01no194_a11.b1)MSMg01-194A11.TJ (MSMg01no194_a11.g1)
ACCAG383100AG383101
length759795
length of high quality
(start - end)
592 (44 - 635)332 (77 - 408)
definitionCHROMAT_FILE: MSMg01no194_a11.b1 PHD_FILE: MSMg01no194_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:47 2005CHROMAT_FILE: MSMg01no194_a11.g1 PHD_FILE: MSMg01no194_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,063,319 - 143,063,911)(143,160,464 - 143,160,796)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGG
AATTCAGTCAGAAACCTCCTACTCCAACAGAATTGGGCCCCTGCATGCAG
GAATTGTTCAATAAATGCTATTTGCTTTTGCATACTTTTTGAGTCTGGGG
TATCATTCTTCAGCTATTTATGGACCCTAACAATCCTCTTTCCATCTTTC
TCTTACATCTGCTTCCGTGATGTAAGCACCGCCCCCCCCATCAATGCTTC
CACCACCATGAGCCATATGGGATGTCCTCCCAACCTTTCTTCCCTTCAGT
TTTTTTTTTCTGTCAGGCATTTTGGTTACAGCAACACAAAAATAGCTAAT
ACAAGTGACTTAATTAGGACTATGCTGGAACCCAGCTGTCTGTCATATTA
TGATTTGGTCAACTCTCCCCACCTAAGGGTCACCTAGGGAAACTTCACGT
ATGTTCTTATTACTGGAAGATGTAGGAAAACCTGCTCTGAGGGGTCTTAG
CTCTGTATAGAAAAATAATTCAAAATAGATTCAGGTGAAAACTCAAGGAA
AATTTTATTGACATTTGAGAAGGAAAACAGTGGGCATGAGAGCTAGAGTT
TTTAGAAGAAAGGGAGGAGGGAGAAGCTCATGAGAATAAGGAGATGGAAG
AAAACAGAGCTTTCTGGGATAAAGTCAGAGAACTGCAGGGCTCAACATAG
GAAACTGCATAATAATAGTTGTCGTGTGTAGTGCTTCCTTTTATTAATAC
CTAATATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCA
TAAAAACCCCTAGCTTTCCAGCCTCGTGGCTGACATCCGGTATCTCCTGT
ATGGGATGCATGTTGGTCCGGAGCTGTCCTCATGTAATTACATCAAGAGA
TGGTCCTTCGTGATTTTTTGGGTGCACGCCGAATCGGAATTGGGTGGGGG
TTTCCCCACTAGGTCTAACAGGTCCCCTGAGTTTGGAGGAAAGAAAGTAA
GAGGGAGAGAGTAGAAGTTGATAGAGCATTGGGAAGCCATCCATAAAGCA
GGGTACTGGCCCAATGAACTATCAGATCCTTGGTTCTCTCACAAGGAGGG
AACAGGGAGCTGTGGGGCTCCCCACACAATGGAGTATCGATGTAGAGTGC
TGGTCTCACTGGATCTGACTACCATCCTGAGTTCCACGTTCCTGAATGAT
CTTCTTCACTTGCTATTCCCTTTCCTGCTTCTCTGATTAACACTATTTTT
CTTCCTTTCCCATAGTTGATTTTCCACGGTCAGAATCATTCTACATTCTT
GTCTTTTATGAATTCATTTGTACTTCAGCTTAGTGTGAGGTTTTCTCTAA
TAATTTGAGCGCATGAAGGCTTTATTTATCCCTTTGTCTATTTACTCCCC
AAATTCTTCTCCGTGTATTTCCCTGTCTTGTATGTTTCCTATTTCATATT
AATTTTTCCATCTATGTTCCATTTCTTTTTCTTTTTCATCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_a11.b1 MSMg01no194_a11.b1 CHROMAT_FILE:
MSMg01no194_a11.b1 PHD_FILE: MSMg01no194_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:47 2005
         (592 letters)



>mm_chr2_143063120_143064111
          Length = 992

 Score =  996 bits (515), Expect = 0.0
 Identities = 571/597 (95%), Gaps = 15/597 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagtcagaaacctcctactccaacagaattgggcccctgcatgcaggaattgttc 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcagtcagaaaccttctactccaacagaattgggcccctgcatgcaggaattgttc 259

                                                                       
Query: 67  aataaatgctatttgcttttgcatactttttgagtctggggtatcattcttcagctattt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aataaatgctatttgcttttgcatactttttgagtctggggtatcattcttcagctattt 319

                                                                       
Query: 127 atggaccctaacaatcctctttccatctttctcttacatctgcttccgtgatgtaagcac 186
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 atggaccctaacaatcctctttccatctttctcttacatctgcttccatgatgtaagcac 379

                                                                       
Query: 187 cgcc-ccccccatcaatgcttccaccaccatgagccatatgggatgtcctcccaaccttt 245
           | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 ccccaccccccatcaatgcttccaccaccatgagccatatgagatgtcctcccaaccttt 439

                                                                       
Query: 246 cttcccttcagtttttttttt------ctgtcaggcattttggttacagcaacacaaaaa 299
           |||||||||||||||||||||      ||||||||||||||||| |||||||||||||||
Sbjct: 440 cttcccttcagttttttttttttttttctgtcaggcattttggtcacagcaacacaaaaa 499

                                                                       
Query: 300 tagctaatacaagtgacttaattaggactatgctggaacccagctgtctgtcatattatg 359
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tagctaatacaagtgacttaattaggactatgctggaacccagctctctgtcatattatg 559

                                                                       
Query: 360 atttggtcaactctcccc----acctaagggtcacctagggaaacttcacgtatgttctt 415
           ||||||||||||||        |||||||||||||||||||||||||||| |||||||||
Sbjct: 560 atttggtcaactct----ttgtacctaagggtcacctagggaaacttcacatatgttctt 615

                                                                       
Query: 416 attactggaagatgtaggaaaacctgctctgaggggtcttagctctgtatagaaaaataa 475
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 616 attactggaagatgtaggaaaacctgctctgaggggtcttagctttgtatagaaaaataa 675

                                                                       
Query: 476 ttcaaaatagattcaggtgaaaactcaaggaaaattttattgacatttgagaaggaaaac 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 676 ttcaaaatagattcaggtgaaaactcaaggaaaattttattgacatttgagaagaaaaac 735

                                                                    
Query: 536 agtgggcatgagagctagagtttttagaagaaagggaggagggagaagctcatgaga 592
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 736 agtgggcatgagagccagagtttttagaagaaagggaggagggagaagctcctgaga 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no194_a11.g1 MSMg01no194_a11.g1 CHROMAT_FILE:
MSMg01no194_a11.g1 PHD_FILE: MSMg01no194_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:47 2005
         (332 letters)



>mm_chr2_143160076_143160807
          Length = 732

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%), Gaps = 1/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cacacccctaagccccttaccccataaaaacccctagctttccagcctcgtggctgacat 662

                                                                       
Query: 61  ccggtatctcctgtatgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccggtatctcctgtgtgggatgcatgttggtccggagctgtcctcatgtaattacatcaa 602

                                                                       
Query: 121 gagatggtccttcgtga-ttttttgggtgcacgccgaatcggaattgggtgggggtttcc 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gagatggtccttcgtgatttttttgggtgcacgccgaatcggaattgggtgggggtttcc 542

                                                                       
Query: 180 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccactaggtctaacaggtcccctgagtttggaggaaagaaagtaagagggagagagtaga 482

                                                                       
Query: 240 agttgatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agttgatagagcattgggaagccatccataaagcagggtactggcccaatgaactatcag 422

                                            
Query: 300 atccttggttctctcacaaggagggaacaggga 332
           |||||||||||||||||||||||||||||||||
Sbjct: 421 atccttggttctctcacaaggagggaacaggga 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)