BAC Information

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BAC

Clone NameMSMg01-194D18
Chromosome2 (Build37)
Map Location 92,025,976 - 92,026,262
singlet/doubletsinglet
Overlap genenone
Upstream geneNr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194D18.T7 (MSMg01no194_d18.b1)MSMg01-194D18.TJ (MSMg01no194_d18.g1)
ACCAG383235AG383236
length723734
length of high quality
(start - end)
---288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no194_d18.b1 PHD_FILE: MSMg01no194_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:03 2005CHROMAT_FILE: MSMg01no194_d18.g1 PHD_FILE: MSMg01no194_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCCAATTACTCTGGTCCTCTGCTGTCAGAGTCACTGGGAGGGAGT
TTCTAGGAACAGCTATATTGTCACAGTATCAGGGAAGTCAAGGTGATTCG
CAGGCTTCCAAGCCCTGGGGATCCCTTACAGTGCTCTGAGACCTGCCTCT
GCTTCACAACGCCCACAGGCATGGAATACATGGTTAAGGAGAGGCCAGGA
CGGGCCCCCCGGCCCTCAGACAATTTACGCATGAGACTATGATAGAAGAG
ATCAGGGTCACAGGACATCTAGAGCAGACACTCTTACCACACACCTAAAG
CAAGGTCCGTGTCTCCTGAGAGTTGGGTAATAGCTTCTAAGCCGTGAGGT
ATAACCTGTACTTATATACAAACCCAGCACACTAACGTCAGCAAGTGTCC
GTGATGCCAGATTTCCCTGCGAGCACTGTGGAAGCGTGTCCCCACAATCA
TACTGTCAGGGACGAGCATAGGGACCATGATGGTCGGAACTAACACTAAC
ACTGACCGTGTTGGTGAGACCGAGGCTGAGGTATAGAGACTTGACCGGAC
ATTCTCCAAGGAACCGAGTGCTGTGACGAATAATCAGACCGCACGTCCTC
TGGGGACCGTGACCCGCGACTGCTAATCACACGAATGAAGGCCTTAGCCT
CGAGTTTTCTGGCTGATTAACCT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTGTCATCATATTCCGGTCATATGTT
GAAATATTCTTTGTTTAGGTCTTGAAGTAGAGGATCTCCCTCTGCACGTC
CACATTGTGTTGTTTTTAAATGATGTCTCCGGGAGTATGGATTTCTAGAA
TCACAAATGTGATTTTAAGGTCTCGGCATGTGTGGGCCTCAGCACTGGCC
TTGACAGTGAACTTTATGGCTGTGTTTTTGGACTTCTAAGATTTTATCCC
ATGGCTGGGATGCTCGTTATGCTTTTTCTTAATGGTAGATAATCAGGAAT
GTAGAGTCTTGTTCTGTATCCCGTTACAGACCCCAAGGGCATTTATTTAT
TAATAATTGATAGCTGACCGCTAAAATCAAATTCATTTGGGCTGGTTGAA
GGTTTTTGGTTGTTGTTTTTCCTCCCTTTTTTCTTTAAAGTTGTCCTGTA
CTCCAGGGAGCCTTTTGGCAGGCATTCTTTCTGGTGGCTCTTTGGGGGCA
CGGAGAGGGTGGTTATCACCTTTTATAGAGGTCGTCACCATCATCTGAAG
TTTTACTGAAGGTCAGCCTGCTCCGGATGCTTAAATTGAGGTTTAAAAAA
GGTAAGTCCTCCTTTTTATAAAATTATTTTATGAGGCTTGTTCTAATTTT
ATGCTATGCCCTCTTTTCGGACTTTTAACAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_d18.g1 MSMg01no194_d18.g1 CHROMAT_FILE:
MSMg01no194_d18.g1 PHD_FILE: MSMg01no194_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:03 2005
         (288 letters)



>mm_chr2_92025776_92026463
          Length = 688

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtcatcatattccggtcatatgttgaaatattctttgtttaggtcttgaagtagagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtcatcatattccggtcatatgttgaaatattctttgtttaggtcttgaagtagagga 260

                                                                       
Query: 61  tctccctctgcacgtccacattgtgttgtttttaaatgatgtctccgggagtatggattt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tctccctctgcacgtccacattgtgttgtttttaaatgatgtttccgggagtatggattt 320

                                                                       
Query: 121 ctagaatcacaaatgtgattttaaggtctcggcatgtgtgggcctcagcactggccttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagaatcacaaatgtgattttaaggtctcggcatgtgtgggcctcagcactggccttga 380

                                                                       
Query: 181 cagtgaactttatggctgtgtttttggacttctaagattttatcccatggctgggatgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgaactttatggctgtgtttttggacttctaagattttatcccatggctgggatgct 440

                                                          
Query: 241 cgttatgctttttcttaatggtagataatcaggaatgtagagtcttg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgttatgctttttcttaatggtagataatcaggaatgtagagtcttg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)