BAC Information

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BAC

Clone NameMSMg01-194I14
Chromosome2 (Build37)
Map Location 14,622,383 - 14,623,059
singlet/doubletsinglet
Overlap geneCacnb2
Upstream geneSt8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335
Downstream geneLOC625342, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194I14.T7 (MSMg01no194_i14.b1)MSMg01-194I14.TJ (MSMg01no194_i14.g1)
ACCAG383420AG383421
length7311,601
length of high quality
(start - end)		686 (46 - 731)---
definitionCHROMAT_FILE: MSMg01no194_i14.b1 PHD_FILE: MSMg01no194_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:25 2005CHROMAT_FILE: MSMg01no194_i14.g1 PHD_FILE: MSMg01no194_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCAATTCCAATCTAACCATCACTTAACAAAGCCAGATTCTGA
TAGCTCCTAATCCAAGATGTCATAAAATTGCACTTCAAATACAATGTAGA
AAACCAGAGTCTTAGGGTCTACTTTGCTGTGGGTTCTCAGGTCTTATTTT
CTTATGACAAACCTATATAGCTACTTCATTTTTCTCCTTGTGTGATTAAT
GATGCTTCCACAGTTTTCTAATATAGTTTCCATTTCATATGAACCAAACA
AAGACAAAACAAAAACGAAAAATTCCCAATACTGTAAGATTTATTTTAAA
TCATTTCATTCAATGCATGTTGATAATATATAACCCCGATTCCTTCCCCT
ATCACCTCCCAGACCCACCCTCACTTCTCTACCCCTCCAACTATGTGTCC
TTCTTTTGTGTTTTTATAATTTATTGACTCCAAGTTTTGCTGCCAATAAA
TTTCTGGGTATAGGGCCATCCACTTAATCATAGTTAACCTATCAGGAGCT
ATATCTTTGAGGGAAAATGAACCTTCTGCTATGCTCCAGAAGCCATAAAT
GTCCATTATTCCTCAGTTAGGGCACAGGCTCATGAACCTCTTCCTACTCC
ATGCTAGGATGTTGATTGGCTTCATCTTGTACAAGTCTTGTATAGGCAAG
CACAGCTGCTGTCAGGTCATGAGTCAATGGC

CGTTTTCCGTTGTCGGCCCTTNTTTTTCTTNCCTTTATACTTTTCTCTTA
TTATCTCTTTCTAAGTTTGTTTCATATTTTTTCTGTTAATGTATATAAAT
GGGAGNAAGGGACGGAGAGAGGAAAAGGNNNCGGGGNTTTCAAACGAGTG
AAGTANGGGGGNGNANNANNTATNNNAGGTAGTGTTTCTCCGAAAAGAAG
AATGGGGGTNAGTTTANNTATTAGAATAATAAATATAATTGTAGATAAAG
GGTGAGATTGTGTGTGTGATGTGTGTTAGTGGGTATGTAGGTGTTTGTGT
ATGATAGGGGTGTGGTGTGTGTGTGGATAGATTATAGNGAGGAGGTTAGG
TAAAGTGAAGATATATTGTGTGTGATTATAGTAGTTATTAGAGATTANAT
GTGAATAAAATATTTTATTAAATTGTATTGGTGTGAGAGTGTAATATTGG
GATGTGTGTTGTGTGTAGTGTGTTGTTGTTGGGGAATTGTGTATGTATAT
TAAGGGGTTTTGTGTGTTGATTATGTTTTTTAGTTGAGGAGAGTGTGGTA
GTTGATTTGGAGTGGAGTTATTGTGTATTGTCTGTGTTTGTGAGGTGGAT
GGAGGATAGAGAGAGAGTTAGNTTGAACGGAGAAAATTAAGCAGTGTATT
TTGTTTTGTATTGGAACTGTGGGTATAGAGAAGGAGCGGAAGAACGAGTG
CTGGGTGATAGTTTTTCAAAATGTAGTGTGATGTGTTTGTCGCGACCGCC
GTTGTACAGTTATGAATATGGATGTGATGGAGTTTTATGTAATGAGGAGT
ATAGACATTGTTGTTGTGGTGGTCGTGGAGCGGTTATATTACCCTACAGA
GGACTGATCTTTTGTTATTTATATCTATATCTGTCTAGTAGTCGGAGCCA
TGAGTGCGTGGTATATGTATTATTAGGATAGTAGAGTGGGAGTGGCAGTG
TTGATAGATTATAGTGTATTGTATATGGAGATATGATGTGCTTTAATAAT
TATATATAGATGCTGATGGGCGGTCGATACGATGTATGTTATGTTATTTA
TATAGAGAGTAGTTACCGTGTGGTGTAGACGGAGTGTGCTATGTGTATAG
CAGAGAATAAATGTAATGATGTGTTGTGTGTTACGCGTAGAGTGTGNTTA
TATCGAGTACTTGGTTTTGGAGCGATTTATATGTTTTATTGGTCATACGG
ATGTGTTGTTATTTGGAGGTTGAGGTAGGTATTAGTGTGCGTATTGGANT
NTTTGTGGTAATGTAGGATAGATCGNGACGATTATATACATATTATAATG
CAGAGCACAGCGTGCNCTATATAGTGATATCATGTATTGATGGTANCGAC
AGTCACAATATATGTATNATACACTGTATATATTAGTATNATTGTGTATA
CTAACACGCAGTATATATGCGAGTGCGTTTGTATTCATACGATAGTATCT
CTGTAGGAGAGGAGTCTGAGGCGAGTATATTATATGATATGACTAGGTTA
GTTTATATGTCTTCTAGTCTGTATGAATGTATGGATGTGATGGTATTATC
ATAGNGTGACTCAGCTATTATAGTTAGTATATGATACTATATACGTAGAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_i14.b1 MSMg01no194_i14.b1 CHROMAT_FILE:
MSMg01no194_i14.b1 PHD_FILE: MSMg01no194_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:25 2005
         (686 letters)



>mm_chr2_14622179_14623259
          Length = 1081

 Score = 1170 bits (605), Expect = 0.0
 Identities = 662/683 (96%), Gaps = 8/683 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttccaattccaatctaaccatcacttaacaaagccagattctgatagctccta 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccaattctaatctaaccatcacttaacaaagccagattctgatagctccta 264

                                                                       
Query: 65  atccaagatgtcataaaattgcacttcaaatacaatgtagaaaaccagagtcttagggtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atccaagatgtcataaaattgcacttcaaatacaatgtagaaaaccagagtcttagggtc 324

                                                                       
Query: 125 tactttgctgtgggttctcaggtcttattttcttatgacaaacctatatagctacttcat 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactttgctgtgggtcctcaggtcttattttcttatgacaaacctatatagctacttcat 384

                                                                       
Query: 185 ttttctccttgtgtgattaatgatgcttccacagttttctaatatagtttccatttcata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttctccttgtgtgattaatgatgcttccacagttttctaatatagtttccatttcata 444

                                                                       
Query: 245 tgaaccaaacaaagacaaaacaaaaacgaaaaattcccaatactgtaagatttattttaa 304
           ||||||||||||||||||||    ||| |||||||||||||||| |||||||| ||||||
Sbjct: 445 tgaaccaaacaaagacaaaa----aac-aaaaattcccaatactataagatttgttttaa 499

                                                                       
Query: 305 atcatttcattcaatgcatgttgataatatataaccc-cgattccttcccctatcacctc 363
           |||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 500 atcatttcatacaacgcatgttgataatatatatccctcgattccttcccctatcacctc 559

                                                                       
Query: 364 ccagacccaccctcacttctctacccctccaactatgtgtccttcttttgtgtttttata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagacccaccctcacttctctacccctccaactatgtgtccttcttttgtgtttttata 619

                                                                       
Query: 424 atttattgactccaagttttgctgccaataaatttctgggtatagggccatccacttaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttattgactccaagttttgctgccaataaatttctgggtatagggccatccacttaat 679

                                                                       
Query: 484 catagttaacctatcaggagctatatctttgagggaaaatgaac-cttctgctatgctcc 542
           ||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||
Sbjct: 680 catagttaacctatcaggagctatatctttgggggaaactga-ctcttctgctatgctcc 738

                                                                       
Query: 543 agaagccataaatgtccattattcctcagttagggcacaggctcatgaacctcttcctac 602
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 739 agaagccataaatgtccattattcctcagttagggcatgggctcatgaacctcttcctac 798

                                                                       
Query: 603 tccatgctaggatgttgattggcttcatcttgtacaagtcttgtataggcaagcacagct 662
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 799 tccatgctaggatgttgatttgcttcatcttgtacaagtcttctataggcaagcacagct 858

                                  
Query: 663 gctgtcaggtcatgagtcaatgg 685
           |||||||||||||||||||||||
Sbjct: 859 gctgtcaggtcatgagtcaatgg 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1081
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1071
Effective search space:   723996
Effective search space used:   723996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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