Query= MSMg01no196_p04.b1 MSMg01no196_p04.b1 CHROMAT_FILE:
MSMg01no196_p04.b1 PHD_FILE: MSMg01no196_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:39 2005
(317 letters)
>mm_chr2_57305126_57305842
Length = 717
Score = 582 bits (301), Expect = e-171
Identities = 310/313 (99%)
Strand = Plus / Minus
Query: 5 gaattccaagatgctatatttaaattacacatacaaaacacatttcataaaggttcctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattccaagatgctatatttaaattacacatacaaaacacatttcataaaggttcctgt 458
Query: 65 tgacagaaggaggttctgatgaagtcctgtaagttgacagatattaagcaaatctgctct 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgacagaaggaggttccgatgaagtcctgtaagttgacagatattaagcaaatctgctct 398
Query: 125 tttagaatcacctatgatcctcagtgttgcagcaattgcatgcaaatacagttgataaaa 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 397 tttagaatcacctatgatcctcagtgttgcagcaattgcatgcaaatacagttgctaaaa 338
Query: 185 taatgaacactagcctcatctccagagtgaccattaaaacaatgggattctatagaagta 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 337 taatgaacactagcctcatctccagaatgaccattaaaacaatgggattctatagaagta 278
Query: 245 cagctgtatgacaaacatgtggactctgtgatcataagctgtataaatgactacttttgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagctgtatgacaaacatgtggactctgtgatcataagctgtataaatgactacttttgc 218
Query: 305 taaccattcaccc 317
|||||||||||||
Sbjct: 217 taaccattcaccc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_p04.g1 MSMg01no196_p04.g1 CHROMAT_FILE:
MSMg01no196_p04.g1 PHD_FILE: MSMg01no196_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:39 2005
(629 letters)
>mm_chr2_57196233_57197266
Length = 1034
Score = 1199 bits (620), Expect = 0.0
Identities = 629/634 (99%), Gaps = 5/634 (0%)
Strand = Plus / Plus
Query: 1 aataaagtgtgacagctatttaaagatttctattattcattccatttgaacgtgacagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaagtgtgacagctatttaaagatttctattattcattccatttgaacgtgacagtt 260
Query: 61 ttggattcttcccactttaacaacttcatgtattcttgaaagtggaataagtgcactcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggattcttcccactttaacaacttcatgtattcttgaaagtggaataagtgcactcga 320
Query: 121 acaatagtttttagtcagccatccatgggttttatgtttaacttaatgtatttattttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatagtttttagtcagccatccatgggttttatgtttaacttaatgtatttattttat 380
Query: 181 gcgaatggatattttgtctgcatgcatggttattcaccttgaacatgtccggtacacaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgaatggatattttgtctgcatgcatggttattcaccttgaacatgtccggtacacaag 440
Query: 241 gaggtcagaagagagcatcctattccccaaaactagagttacagatggctgtaagctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaggtcagaagagagcatcctattccccaaaactagagttacagatggctgtaagctgcc 500
Query: 301 acatgggtgctagcaattgaacccttgttcgctggaagagaggccagtgctcttaaacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgggtgctagcaattgaacccttgttcgctggaagagaggccagtgctcttaaacac 560
Query: 361 tgagccatgtctccagtccacctaccggttttcattaatgcttgtttgtagttgcccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagccatgtctccagtccacctaccggttttcattaatgcttgtttgtagttgcccatt 620
Query: 421 cttgtaagtgcatttgtgattttgctcttgaattgtacagtatgtgttag----gattct 476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cttgtaagtgcatttgtgattttgctcttgaattgtacagtatgtgttagtgaggattct 680
Query: 477 tggctaaggtttagaaagatttttttt-ccatctatgtgaagagtttgtctttcatttta 535
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 tggctaaggtttagaaagatttttttttccatctatgtgaagagtttgtctttcatttta 740
Query: 536 attattgacataatacatcactgttttgtttgaaagtttcttattgctaacctagtcctc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attattgacataatacatcactgttttgtttgaaagtttcttattgctaacctagtcctc 800
Query: 596 tccatttggcccatctaatgacattgttatttag 629
||||||||||||||||||||||||||||||||||
Sbjct: 801 tccatttggcccatctaatgacattgttatttag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1034
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1024
Effective search space: 633856
Effective search space used: 633856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
