Query= MSMg01no197_e11.b1 MSMg01no197_e11.b1 CHROMAT_FILE:
MSMg01no197_e11.b1 PHD_FILE: MSMg01no197_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:06 2005
(294 letters)
>mm_chr2_32675827_32676514
Length = 688
Score = 503 bits (260), Expect = e-147
Identities = 280/290 (96%), Gaps = 6/290 (2%)
Strand = Plus / Plus
Query: 1 ttcctgcctctgcctctggagtgctgggattataaatgtgagctgccacacaaggccagc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttcctgcctctgcctctggagtgctgggattataaatgtgagctgccacacaaggctagc 260
Query: 61 ccacataattatacaaccagcactttactgactgacccatctccttagccattttctttc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ccacataattatacaaccagcactttactgactaacccatctccttagccattttctttc 320
Query: 121 tggcacttgtgtttattgaactcagtgaagtaaccgtgggcagtaagaggctgcctgttt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcacttgtgtttattggactcagtgaagtaaccgtgggcagtaagaggctgcctgttt 380
Query: 181 ccattgttgtaagatatgctgtaccatgaacgttctactcttttttttttttatatatac 240
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 381 ccattgttgtaagatatgctgtaccatgaacattctactctttttttttt------atac 434
Query: 241 acagcatgtcactcatagcccaggctgaacccaagcctcactacatagcc 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 acagcatgtcactcatagcccaggctgaacccaagcctcactacatagcc 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 688
Length adjustment: 9
Effective length of query: 285
Effective length of database: 679
Effective search space: 193515
Effective search space used: 193515
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no197_e11.g1 MSMg01no197_e11.g1 CHROMAT_FILE:
MSMg01no197_e11.g1 PHD_FILE: MSMg01no197_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:06 2005
(614 letters)
>mm_chr2_32769801_32770813
Length = 1013
Score = 1118 bits (578), Expect = 0.0
Identities = 605/615 (98%), Gaps = 3/615 (0%)
Strand = Plus / Minus
Query: 1 caggcccagtctcaacaggggaggaagcagagaactttctcacagtcctgccgg-tggag 59
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 813 caggcccagtctcaacaggggaggaagcagagaactttctcacagtcctg--ggttggag 756
Query: 60 ggaagggccatgcctggaactggccttgtcagttcctgcagggggtaaagagagctggcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggaagggccatgcctggaactggccttgtcagttcctgcagggggtaaagagagctggcc 696
Query: 120 tgggggtgggactttctgtcacagtcttttatgtgtccactccagcccaggacacacaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgggggtgggactttctgtcacagtcttttatgtgtccactccagcccaggacacacaga 636
Query: 180 accttccagcttgctgtgtgccagactggaggctcacagctctgagccagctcatcccac 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 635 accttccagcttgctgtgtgccagactggaggctcacagctctgagccagctcatccccc 576
Query: 240 acacacacacacctctattcccagtccctactgtaatatcccacggggaactgaacagtg 299
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccccacacacaccaatattcccagtccctactgtaatatcccacggggaactgaacagtg 516
Query: 300 tcccctccctactcagtcctgtcctcacccttcccctacctgacctagggtcccctactc 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tccccttcctactcagtcctgtcctcacccttcccctacctgacctagggtcccctactc 456
Query: 360 ggtcacagcaggtaagccagcagccctgggaactttcagaggactcatgggccagcaagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggtcacagcaggtaagccagcagccctgggaactttcagaggactcatgggccagcaagg 396
Query: 420 aaggagggtgtcccaggccaggcagccagagcctgagccagagccacagccccagggacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaggagggtgtcccaggccaggcagccagagcctgagccagagccacagccccagggacc 336
Query: 480 tgggaacaggagctctttgtgggcagcagggcagggcccagcccaggtggcagggcttgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgggaacaggagctctttgtgggcagcagggcagggcccagcccaggtggcagggcttgg 276
Query: 540 cctggctgaagagccggttgcctcccagtggacagatgccagagggtggaggcctctgta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cctggctgaagagccggttgcctcccagtggacagatgccagagggtggaggcctctgta 216
Query: 600 nagaggtggggtgaa 614
||||||||||||||
Sbjct: 215 gagaggtggggtgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
