BAC Information

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BAC

Clone NameMSMg01-197O17
Chromosome2 (Build37)
Map Location 40,632,412 - 40,632,712
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197O17.T7 (MSMg01no197_o17.b1)MSMg01-197O17.TJ (MSMg01no197_o17.g1)
ACCAG385460AG385461
length685790
length of high quality
(start - end)
305 (45 - 349)39 (129 - 167)
definitionCHROMAT_FILE: MSMg01no197_o17.b1 PHD_FILE: MSMg01no197_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:58 2005CHROMAT_FILE: MSMg01no197_o17.g1 PHD_FILE: MSMg01no197_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGACATGACATTCTGCAAGTGAATACAGCAGGGTAGGGTTGAC
TTTTTCATTTGAATGCCTCCTAGTGGAATGTACAGCATTATTGTTTAAAT
GATGGTTGTCTGCTGGTTGAATTTAAAATTGGTGCCTTTGGCTGCCCAGC
TTTATGAAACTCAGGACCAACTCTGATGTCTAACCAATATCTTCTACATA
AGTGTAGTGCTGTGTTGTAATAGTCAGCATCAGACGTTCTTGGTGATGCA
TTTTCTACTGGATAACCTGGATTAGAGCAGTTCCTAAGGAATTTTATTAT
TTTTTTTATTGCCCCCCCCCCTGCGAGAGAAGAGAAAAAAACAATGTGAC
TGTAGCTGAACCACATAAAAAATTGAGAAAATACAATTTTGGCAATATCG
CTTTAATATTTGAAATTCCATTTCTTCCTATAGGTTCTGTGTTTTGAAAT
TATGTTTACCTTAAAACATTGGTACTATCCGACTGAGATTTTCTTTAATC
AGTGTCACGTGAGGTTCCTCTTCTAACTTGTTTGTGCAATAAAGTATGTC
TCAGTATTTACATTATTTATAAGTGCTTGTGTGTCAGGCTTTAGTTAAAT
GATAACCCATACATTACATATATGAGCCCCTTTAT
CGTAAAAATAACTTACTTTTTACTTCTTCTTACCCTCTCTTTTTTATACT
TATCAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACAAAATTCTTTGGACATAACCACTGTTGG
AATCAAGTTTGCTCTGTTTTTCTTCCTCGCTGTTGGCATGTAATAGTTGA
TTAACTTTATTTAGTATCAGGACTTTAGTTCTAAATTTAGTAATTAAATT
AAACTCTTAGTTTCACTAATGCAGATTTCCCAAGGGTGGGTTGAACAGAT
CTATAGGTTTGCTGACATTGTCTAACAATGCTGTTTTTAAATACACAGCA
ATGTGGCATTAAATCCATTTCCTTATCTAGACAAGTCACAGTATTGTAAA
CCTCTTCAACCCCATTCTTTGTCATCACTGTGCAGATGAGTTGTCCGTGC
TCCTCTTTCTGGCACTTTTGCACTAAAATGTGACATTTTTTTGACTACAG
ATGTGCTTTTGACACGTACCATTTTCTCTTTATTACATAAGAAGTGCGAA
ATGTGATTTACCGTTTGCAAAAATGTTAAATGAACAGCAAATGTTCAATG
TCGTATTTCATTTCACGTTTAATCTGAATAAAATTTATTTCGCAATATAA
CAATCGATTACTCATATACTCTACAGTGAAACCACGCCAGTATATCATTT
TCTTCGCCCTAGCATAATACTAAAAACTTCGTCATGAATTCCACAAATCT
AACTAACAAAGGGGAAATTTTACTTTTTTACATAAAATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_o17.b1 MSMg01no197_o17.b1 CHROMAT_FILE:
MSMg01no197_o17.b1 PHD_FILE: MSMg01no197_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:58 2005
         (305 letters)



>mm_chr2_40632208_40632912
          Length = 705

 Score =  559 bits (289), Expect = e-164
 Identities = 298/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagacatgacattctgcaagtgaatacagcagggtagggttgactttttcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattctctagacatgacattctgcaagtgaatacagcagggtagggttgactttttcat 446

                                                                       
Query: 65  ttgaatgcctcctagtggaatgtacagcattattgtttaaatgatggttgtctgctggtt 124
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaatgtttcctagtggaatgtacagcattattgtttaaatgatggttgtctgctggtt 386

                                                                       
Query: 125 gaatttaaaattggtgcctttggctgcccagctttatgaaactcaggaccaactctgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatttaaaattggtgcctttggctgcccagctttatgaaactcaggaccaactctgatg 326

                                                                       
Query: 185 tctaaccaatatcttctacataagtgtagtgctgtgttgtaatagtcagcatcagacgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctaaccaatatcttctacataagtgtagtgctgtgttgtaatagtcagcatcagacgtt 266

                                                                       
Query: 245 cttggtgatgcattttctactggataacctggattagagcagttcctaaggaattttatt 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 cttggtgatgcattttctactggagaacctggattagagcagttcctaaggaattttatt 206

            
Query: 305 a 305
           |
Sbjct: 205 a 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)