BAC Information

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BAC

Clone NameMSMg01-197O18
Chromosome2 (Build37)
Map Location 40,547,605 - 40,547,854
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197O18.T7 (MSMg01no197_o18.b1)MSMg01-197O18.TJ (MSMg01no197_o18.g1)
ACCAG385462
length702723
length of high quality
(start - end)
---248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no197_o18.b1 PHD_FILE: MSMg01no197_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:58 2005CHROMAT_FILE: MSMg01no197_o18.g1 PHD_FILE: MSMg01no197_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XX
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGACTTTCAAAGAAGATTT
ATGCCAACACCCTCCAAATTGTTCGATAAATTATAAATTGAAGGAATATT
TCACAAAATATTTTACGAGGTCACATATTCATAGACTCCAAGAATTTGGG
AATAAAGGAAAGGACTAATAAGGGACACATTTTTTTTTCTGGGAATGAGG
AAAGGAAAAAATTTTTTAGGGAGAATGGAAGTATGAGGTAGAGGAACAGG
AGGATCAGGTCATGAGTGGAGAGGTGTTANANTNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNTNNNTTNNNNNTCCCCCCCCCTCAAAAAAAAAAAAANTTNTTGGGG
TGGGGATCTCTTCTTCCATCCACCCCCTACACAATCGCGATCCTCCCCTT
TTTATTTTCTTCATCCTCTATCCCCCATTTCATTTCTCATTTTTCGCTAG
TCCTTTGATCTTTAAATACTACTTCTCATCATCACCCTCTTCACTATCCT
TCCGTTTCTCCCCCTCTTTTTTCTTTTTCCGTAATCATCCCCCATCCCTT
TTTTTTCCCCCACTTCTTTAACCCTCCGTCCCTTACTTCTTTCTTTTTCC
CCCTCTCCTTCCCCTTCCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_o18.g1 MSMg01no197_o18.g1 CHROMAT_FILE:
MSMg01no197_o18.g1 PHD_FILE: MSMg01no197_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:59 2005
         (248 letters)



>mm_chr2_40547405_40548054
          Length = 650

 Score =  426 bits (220), Expect = e-124
 Identities = 242/250 (96%), Gaps = 2/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagactttcaaagaagatttatgccaacaccctccaaattgttcgataaattataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 caacagactttcaaagaagatttatgccaacaccctccaaattgttaaataaattataaa 260

                                                                       
Query: 61  ttgaaggaatatttcacaaaatattttacgaggtcacatattcatagactccaagaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaggaatatttcacaaaatattttacgaggtcacatattcatagactccaagaattt 320

                                                                       
Query: 121 gggaataaaggaaaggactaataagggacacatttt--tttttctgggaatgaggaaagg 178
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||
Sbjct: 321 gggaataaaggaaaggactaataagggacacattttcttttttctgggaatgaagaaagg 380

                                                                       
Query: 179 aaaaaattttttagggagaatggaagtatgaggtagaggaacaggaggatcaggtcatga 238
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaatttagggagaatggaagtatgaggtagaggaacaggaggatcaggtcatga 440

                     
Query: 239 gtggagaggt 248
           ||||||||||
Sbjct: 441 gtggagaggt 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)