Query= MSMg01no197_p22.b1 MSMg01no197_p22.b1 CHROMAT_FILE:
MSMg01no197_p22.b1 PHD_FILE: MSMg01no197_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:04 2005
(706 letters)
>mm_chr2_114084088_114085193
Length = 1106
Score = 1187 bits (614), Expect = 0.0
Identities = 680/702 (96%)
Strand = Plus / Minus
Query: 5 gaattcagtcattctatatcatgaaaggatgccttgtgcattctgtaccttccactattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 gaattcagtcattctatatcatgaaaggatgccttgtgcattctgtaccttccactattc 847
Query: 65 tgtgaccttccctctgctcagggatgtgtgtgggactaaagagctcctgcatacagagag 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 846 tgtgaccttccctctgctcagggatgtatgtgggactaaagagctcctgcatacagaaag 787
Query: 125 aaacccactggcttaagccatgccctcggcaaatctggatgctgaaaagcagaaattagc 184
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 786 aaacccactggcttaagccttgccctcagcaaatctggatgctgaaaagcagaaattagc 727
Query: 185 ctgtcaaacaagcatgtgtgtaagttctacacatggactccatcagcacatatctgtggg 244
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 726 ctgtcaaacaagcatgtgtgtaagttctatacatggactccatcagtacatatctgtggg 667
Query: 245 ctttgtttgcctttaccatgtgtaagaaaggctcaattcaatacaggacacacctgtgaa 304
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctttatttgcctttaccatgtgcaagaaaggctcaattcaatacaggacacacctgtgaa 607
Query: 305 gtgaaagggcctctccctccacagaagctcctatgaggtatacagataaataaagacagg 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 606 gtgaaagggcctctccctccacagaagttcctatgaggtatacagataaataaagacagg 547
Query: 365 attgtagaacagcggactaaacatgaagagagagtcccctggcaggaatctaatatgtca 424
||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 546 attgtagaagagtggactaaacatgaagagagagtcccctggcaggaacctagtatgtca 487
Query: 425 agaaggaaggcttattgttgctcttgttgtttttcagaggtgggaatgaaaatataaatg 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agaaggaaggcttgttgttgctcttgttgtttttcagaggtgggaatgaaaatataaatg 427
Query: 485 aggaaagagcttagaaagtagttttccacccaacaggacaacaggtgtacccaggcttat 544
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 426 aggaaagagcttagaaagtagttttccatccaacaggacaacaggtatacccaggcttat 367
Query: 545 ctgaggaactggaagaagctgtgtcgatggaggtgcacgtacagcttgagagagaagagg 604
||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||
Sbjct: 366 ctgaggaactggaggaagctgtgtcgttggaggagcacgtacaacttgagagagaagagg 307
Query: 605 cagggaaggggcgaggaggctgaggagagcacagtacatcccacagagaatcttacaggt 664
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 306 cagggaaggggcgagaaggctgaggagagcacagcacatcccacagagaatcttacaggt 247
Query: 665 tattgaaaggcagctgaattccagccagagggcaagggaaag 706
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tattgaaaggcagctgaattccagccagagggcaagggaaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no197_p22.g1 MSMg01no197_p22.g1 CHROMAT_FILE:
MSMg01no197_p22.g1 PHD_FILE: MSMg01no197_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:04 2005
(244 letters)
>mm_chr2_113944950_113945595
Length = 646
Score = 418 bits (216), Expect = e-121
Identities = 238/246 (96%), Gaps = 2/246 (0%)
Strand = Plus / Plus
Query: 1 ttctctttgtattttgctatgactgagtaggtagaatatttagttactttcccatcatga 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 ttctctttgtattttgctatgactgagtaggtagaatatttagttacattcctatcatga 260
Query: 61 ga--agggggggatataaaaatagtaggagtaaggaaaatgacttcaaaggcagcaatct 118
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggggggggggatataagaatagtaggagtaaggaaaatgacttcaaaggcagcaatct 320
Query: 119 tggctttagcttggagttgtttacaaagaaaacagaaccataaaacaaaaccacagggcc 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tggctttagcttggagttgtttacaaagaaaacagaatcataaaacaaaaccacagggcc 380
Query: 179 tggtgagatggctcagggtaaaggtgcttgtcaccaagcctgcgaccctgtgacccgggc 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtgagatggctcggggtaaaggtgcttgtcaccaagcctgcgaccctgtgacccgggc 440
Query: 239 tggacc 244
||||||
Sbjct: 441 tggacc 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space: 149695
Effective search space used: 149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
