BAC Information

Click to search

BAC

Clone NameMSMg01-199E12
Chromosome2 (Build37)
Map Location 99,405,772 - 99,406,028
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886, LOC621386
Downstream geneLOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199E12.T7 (MSMg01no199_e12.b1)MSMg01-199E12.TJ (MSMg01no199_e12.g1)
ACCAG386276AG386277
length746787
length of high quality
(start - end)
---257 (85 - 341)
definitionCHROMAT_FILE: MSMg01no199_e12.b1 PHD_FILE: MSMg01no199_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:47 2005CHROMAT_FILE: MSMg01no199_e12.g1 PHD_FILE: MSMg01no199_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCACCTCTGACCCCCATTTTTAAATGGACCTATTTG
ATTTTCTGAACTCCGCCTTCTTAATTTCTTTATATATGATGAATATTAGG
CCCCTATCTGATTTAGCAAAGTAATGATCCTTTCCCAAACTGTTGCCGGG
CTTTTTGACTTATTGACGGAGCCATTAGACTTGCGGAACCTTTGGACCTT
CATTATATCCCAATTGACAATTCTACATCTTACCGCGCTCCCCATCGGAG
TATCCGATCGACAATTTTCCTCTGTGCCCATATCTTCAGAGATTTTCCCC
ACTTTCTATTCTATCTGTTCCGGAGCCTCTGACATTTATGTGAGACTCAT
TGACCTACTATATAACCGCCCTCACATCAAGGAGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTATTCGCCCCGCTTGCTACACT
TTTTCTCTCTATTCGCCAATACTTCTCCCAATTTCTTCCTTTACCG
CCTCTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACCACTAAGGACA
ACATCTTTTTAAAAAGAAATAGCTTTTTAAAATCATTGTTTTTGTATATT
TACTATGAATTTTGATAAAAGCTTCCAGAACACAAATTTGTTTTTTTCTA
TTCACTTAAATAAGATTGTTTGAAATTCATTTCCAACTTCTGTGTCTGTC
ACTCAATTCCTGAAATCCATGACTTTGTCTGAAAGCATTCTAATGTTTGA
GCTGTACATGCTACAGAGGATGGCTTTGTCTGGCATCAGTGGGAGGAGAG
GCACTTGGTCCAGTTAAGACTTGATGCCTCAGTGTAAGAAAATGCTATAG
TGGCCATTGAGGTGGGAGTGCCCCCCCTAATATTTTTATTTTTTTTACAC
ATCAACAACCCATTTTTTTCATTTTTTCCTCCTTTTTTTCTCTTCCCTCT
TCCACTACCCTTTTTTTTTTTTCCTTTTTTTTTTTCCCCTTATTTTTTTC
TCCCTTTCTTTTCCTCCCCCCCCTTCCCACTTTTTTTTTTTCCCCACTCC
TATTTTTTATCCATACTTTTCCCCTTCTCCATTTTACTCTTTTTCTTTTC
CCACTCCATTATTTTCACTATCATTTAAACTTATTCCCCATTCTTTTCAT
AATTTTTACCACATTTTTTCCCCTTCCTTTTCCCACTTTTATTACCAATT
ACACTATTAACTCTTACCATTTTAAAATTTTATCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_e12.g1 MSMg01no199_e12.g1 CHROMAT_FILE:
MSMg01no199_e12.g1 PHD_FILE: MSMg01no199_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:47 2005
         (257 letters)



>mm_chr2_99405614_99406270
          Length = 657

 Score =  458 bits (237), Expect = e-133
 Identities = 252/257 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaccactaaggacaacatctttttaaaaagaaatagctttttaaaatcattgtttttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 415 aggaccactaaggacaacatctttttaaaaagaaatagctttttaaaatcatcgtttttg 356

                                                                       
Query: 61  tatatttactatgaattttgataaaagcttccagaacacaaatttgtttttttctattca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 355 tatatttactatgaattttgataaaatcttccagaacacaaatttgtttttttctattca 296

                                                                       
Query: 121 cttaaataagattgtttgaaattcatttccaacttctgtgtctgtcactcaattcctgaa 180
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 295 cttaaataagagtgtttgaaattcatttccaacttctgtgtctgtcactcaactcctgaa 236

                                                                       
Query: 181 atccatgactttgtctgaaagcattctaatgtttgagctgtacatgctacagaggatggc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 235 atccatgactttgtctgaaagcattctaatgtttgagctgtagatgctacagaggatggc 176

                            
Query: 241 tttgtctggcatcagtg 257
           |||||||||||||||||
Sbjct: 175 tttgtctggcatcagtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)