Query= MSMg01no199_l11.b1 MSMg01no199_l11.b1 CHROMAT_FILE:
MSMg01no199_l11.b1 PHD_FILE: MSMg01no199_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:22 2005
(227 letters)
>mm_chr2_44971717_44972351
Length = 635
Score = 362 bits (187), Expect = e-104
Identities = 222/241 (92%), Gaps = 14/241 (5%)
Strand = Plus / Plus
Query: 1 atttggcccccgctaatgattttttttt------aaagcaaattgtgcttattttgtacc 54
|||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 195 atttggccacagctaatgatttttttttttttttaaagcaaattgtgtttattttgtacc 254
Query: 55 atgtggaggg-----aaaaaaaggattcttttctggtttagaaatggagctggtctttca 109
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgtggaggggaaaaaaaaaaaggattcttttctggtttagaaatggagctggtctttca 314
Query: 110 tctaaaggaattgtttcaatcctgtagtgctatgcaggacgtggctaacctaacttcgtt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tctaaaggaattgtttcaatcctgtagtgctatgcaggacgtggctaacctaacttcgtt 374
Query: 170 tagagttgcgagcaaaggctgat---acccgggacccctggattatgtgtgtgaggtcac 226
||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||
Sbjct: 375 tagagttgcgagcaaaggctgatgatacccgggacccctggattaggtgtgtgagggcac 434
Query: 227 g 227
|
Sbjct: 435 g 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 635
Length adjustment: 9
Effective length of query: 218
Effective length of database: 626
Effective search space: 136468
Effective search space used: 136468
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no199_l11.g1 MSMg01no199_l11.g1 CHROMAT_FILE:
MSMg01no199_l11.g1 PHD_FILE: MSMg01no199_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:22 2005
(575 letters)
>mm_chr2_45071694_45072669
Length = 976
Score = 1060 bits (548), Expect = 0.0
Identities = 569/578 (98%), Gaps = 5/578 (0%)
Strand = Plus / Minus
Query: 1 cttctgcccatcagactctgccccagcacaccggctacccagataggcaagaagttccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cttctgcccatcagactctgccccagcacaccggctacccagataggcaagaagttccca 717
Query: 61 tctaagaccaaacatcctcactcctacagagaatgagacagagtgaagggaaaaatgaat 120
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 716 tctaagaccaaacatcctcattcctgcagagaatgagacagagtgaagggaaaaacgaat 657
Query: 121 gaggaaatactctttataactcttcagctacagtgattagagctaagggacattggaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaggaaatactctttataactcttcagctacagtgattagagctaagggacattggaaat 597
Query: 181 tcttacatacaggacacaggtacaataaagcaggacacacccatccagatgacattctta 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 596 tcttacatacaggacacaggtacaataaagcagg--acacccatccagatgacattctta 539
Query: 241 gtagtcagaagcttgtggcaagtagagaatgccaggtgctaagagctgagcttcctggac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtagtcagaagcttgtggcaagtagagaatgccaggtgctaagagctgagcttcctggac 479
Query: 301 tccgggttgagtagccattatgacttttctgtctgacctaaatgacactatccttttgtc 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 478 tccgggttgagtagccattatgacttttctgtctgacctaaatgactctatccttttgtc 419
Query: 361 ctggttgttatgagcagaatgtgagtcttctccactgtgatataccttatgctaattaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctggttgttatgagcagaatgtgagtcttctccactgtgatataccttatgctaattaaa 359
Query: 421 tgttgctgactagcacagcaataagtttcgagacttctaaaagaccagattaaaacaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgttgctgactagcacagcaataagtttcgagacttctaaaagaccagattaaaacaaag 299
Query: 481 gccaaccagcaacattctctccctcctccttagtgactcatgtgacctgtg---agttgt 537
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 298 gccaaccagcaacattctctccctcctccttagtgactcatgtgacctgtgacaagttgt 239
Query: 538 tgtttcttgtaaaagttctcagacctcgagcagcattg 575
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgtttcttgtaaaagttctcagacctcgagcagcattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
