BAC Information

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BAC

Clone NameMSMg01-202A17
Chromosome2 (Build37)
Map Location 120,227,697 - 120,292,832
singlet/doubletdoublet
Overlap geneTmem87a, Ganc, Capn3
Upstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Downstream geneZfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202A17.T7 (MSMg01no202_a17.b1)MSMg01-202A17.TJ (MSMg01no202_a17.g1)
ACCAG387357AG387358
length720722
length of high quality
(start - end)		313 (46 - 358)340 (383 - 722)
definitionCHROMAT_FILE: MSMg01no202_a17.b1 PHD_FILE: MSMg01no202_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:42 2005CHROMAT_FILE: MSMg01no202_a17.g1 PHD_FILE: MSMg01no202_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,292,524 - 120,292,832)(120,227,697 - 120,228,036)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGCTGTTGCGCAAGAGTCTCATGAGTCTCTTTTCCCACCCACTG
CAGTACTTCCCTCATATTTCCNTCCACAGTGCTGAAGCCACAGTTGATCT
TACACCACCAGGCTTCCTTCCAAAGTGCTTGGTGGGGTGAGGGGATGGCC
ATTACCCGCTATGGACTTGGAGATCAAGCAATGCTAGGCTGAACACCTCA
ACTCGGTAACACATGGTTGTTGATTAGTGGCAGCTTAGGAAACTCATTTA
AACGTCACCTTTGGAGCCTAATTCAAGAAATGTCCAGTTATGGTAATAAG
CAGTAGGTCTTTTGTATGCACCACCGACCCGCTTCTGTCTGACTGGAGGC
TTCCTTCAGGCACAGCCCCCAACAAAAAAAAAAATAGCGAGGTGAAGGAG
TGAAGGTTATACAGTTTGTCAGAGCATATTTAGCTGCATGCGTGCTTATT
TCACTTACTAGCAGCCATCCTGCCTTATATATGCCAGTGAACCGACGCCC
TCCTCTCCTCCTTTTCCTCCTAGGAAATGCTATCTTTATACTCTAAACTC
CTGAAATAGATTTACTATATCCCACGACTTGCTTTGTTTATATAAAATGC
ATCTTTCAAATGCTACTCTCAAACAACTATTTCTTTTTCCCCCACCCTTT
TTACACTTCTCCTTTCTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGTCACAAAGCTACAGAG
AAAAACTCTGTCTCCAAACAAACACCCAAAGTCACATGACAGTGATGATC
TAGAATACTATCCCCATCTCAAAAACAGAGCACAGTTTGGCTTCAGATCT
TTTGTTTCTCTCACTAGAAAAACTGGCTTTCTTCTATACAGTCCCTATTT
CCTGGTAATATCCTTGAACTCAATGTTCCTTGAAGTGTTAAACACTCCCT
TGGTAAACATACTGAGTATCTTAGTCAATGGTCTCACAATCTTGGGCCAT
GTTTTCAGTAAATATTTAACAAGCACACCAGCACAAAATCTTGTCCTGAC
TCAGAACAGATCTAAAAATGATGTAAGCACTCTACAAACAAAATTAAATA
TAATTCAACTTAACTATGATTAAAAATATAATTTATGTACATAAATATAC
ATACACACTGTATAACATACAGCCAATATGAATTCAATAAAGTATACATT
AAGTATGTAATACAAATATATAATATAAGCTACATATAATAGTGTATCTA
TACATAACAGCAAACTGAAAAACAATAAGACAATAAAAATTCATATAAGT
ACTCAGAATATTGCTCACAGATAGGACTTATAAATTAAATATTTTTATCT
AAACAGTGCCAGGTTATTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_a17.b1 MSMg01no202_a17.b1 CHROMAT_FILE:
MSMg01no202_a17.b1 PHD_FILE: MSMg01no202_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:42 2005
         (313 letters)



>mm_chr2_120292320_120293032
          Length = 713

 Score =  576 bits (298), Expect = e-169
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgctgttgcgcaagagtctcatgagtctcttttcccacccactgcagtacttc 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcatgctggtgggcaagagtctcatgagtctcttttcccacccactgcagtacttc 454

                                                                       
Query: 65  cctcatatttccntccacagtgctgaagccacagttgatcttacaccaccaggcttcctt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctcatatttccctccacagtgctgaagccacagttgatcttacaccaccaggcttcctt 394

                                                                       
Query: 125 ccaaagtgcttggtggggtgaggggatggccattacccgctatggacttggagatcaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaaagtgcttggtggggtgaggggatggccattacccgctatggacttggagatcaagc 334

                                                                       
Query: 185 aatgctaggctgaacacctcaactcggtaacacatggttgttgattagtggcagcttagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatgctaggctgaacacctcaactcggtaacacatggttgttgattagtggcagcttagg 274

                                                                       
Query: 245 aaactcatttaaacgtcacctttggagcctaattcaagaaatgtccagttatggtaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaactcatttaaacgtcacctttggagcctaattcaagaaatgtccagttatggtaataa 214

                    
Query: 305 gcagtaggt 313
           |||||||||
Sbjct: 213 gcagtaggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no202_a17.g1 MSMg01no202_a17.g1 CHROMAT_FILE:
MSMg01no202_a17.g1 PHD_FILE: MSMg01no202_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:42 2005
         (340 letters)



>mm_chr2_120227497_120228236
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaatcttgtcctgactcagaacagatctaaaaatgatgtaagcactctacaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaatcttgtcctgactcagaacagatctaaaaatgatgtaagcactctacaaacaaa 260

                                                                       
Query: 61  attaaatataattcaacttaactatgattaaaaatataatttatgtacataaatatacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaaatataattcaacttaactatgattaaaaatataatttatgtacataaatatacat 320

                                                                       
Query: 121 acacactgtataacatacagccaatatgaattcaataaagtatacattaagtatgtaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacactgtataacatacagccaatatgaattcaataaagtatacattaagtatgtaata 380

                                                                       
Query: 181 caaatatataatataagctacatataatagtgtatctatacataacagcaaactgaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatatataatataagctacatataatagtgtatctatacataacagcaaactgaaaaa 440

                                                                       
Query: 241 caataagacaataaaaattcatataagtactcagaatattgctcacagataggacttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caataagacaataaaaattcatataagtactcagaatattgctcacagataggacttata 500

                                                   
Query: 301 aattaaatatttttatctaaacagtgccaggttattaaag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaaatatttttatctaaacagtgccaggttattaaag 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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