BAC Information

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BAC

Clone NameMSMg01-202I16
Chromosome2 (Build37)
Map Location 6,976,396 - 6,976,719
singlet/doubletsinglet
Overlap genenone
Upstream geneUpf2, LOC100040343, 5430407P10Rik, LOC634939, Echdc3, 1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202I16.T7 (MSMg01no202_i16.b1)MSMg01-202I16.TJ (MSMg01no202_i16.g1)
ACCAG387656AG387657
length717724
length of high quality
(start - end)
325 (46 - 370)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no202_i16.b1 PHD_FILE: MSMg01no202_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:23 2005CHROMAT_FILE: MSMg01no202_i16.g1 PHD_FILE: MSMg01no202_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGCTGAACCTATTTGTGCAAGCTCTCCATGTCTTTGCTCACC
TAATGCATATTTATTAAAACCTAGTATGTGCTAAGTACTATGTGTCCCTT
CGGAGACCGATAGCAGGAGGCGGATGATTCAGGTAGCGTTCAGCTTTCCA
TGCTCTGCCAGGGATTCCCAGTGTACCGTATGAGTCTGTGGGCTCTTCCC
ATGCATGGCGGGAGGAAGAGTTGTCGAGTACATATGCTGTGAGCACAGCA
AGTTCAGTGGATACTGAGATTTGAGCACAGTCTCAGACTACTTTACTCTC
TCTCTCTCTCTCTCTCTCTCTCTCGCCTGTCTGTCTATCTCTGTCCTCTG
TATATGCATATAAGCACATGTGATGCATGTTCACATGTGTTTGCATGCCA
GAGCCCACATGCCGCAGACTGTAATGGAGGTTAGAGGTCAACCCCAGCTC
TCCATGTTTGCTTTCTACCTTGATTGTTGCCCACATCATCAGGCTAACTG
ACTCCCGAGCTTCTGGGAATTCTGTCTATCTCACTGTAGGAGGGCTGGAT
TACTGATGTGTAACACTACCATTGAATCTGAGAATCTAAACTCGGATTCT
TAAGATTGTGTGGAAAGTTCTATACGCACAAGCCTCCCTCCCCGCCCCCA
GCCTGTATTCTCAGGCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAACTGCTAAAGTTCTGACTTTT
GTTTCTCTTAACACTCAATACTTCCATCTGCTTGCTTATGTATTTCTACG
TAAGAGATTCTATGTAAATCTTACCTATGCACCTCTGTGGAGAAGCGTGT
TTCCTAACTGGCTTTTTCAAGTTTTTGCCCATATCTTTGCTTTTCTATGG
TTGGAAAATAAGATGCTGAAGGTGTAGTTCTTTTGGCTTTTACACTGCTT
GGTATTCTCTGAGCTCCTGGGATCTGTGGTTGGATGTTTGACATTTACTT
GGGAATATTCTTTGTTGCTGCCCCCCCCCACAATTCCTCTGTTCCTTCCC
TCTTCTGTCTTCCTGCTCTCCGCGTGACATGTGGTTTATAGATGGTACGG
TTCTTCCATGGTGCTTATGATATGCGGTTCTTGCGTTTTATTTCCCCTTT
ATTTTCTTTGCTTCATAAATCTGGAAGGGTGTCTAACGTGCAGTCTTCAA
ATTTACAAATCCTTTGATAAGATGGTTTAGTCTTAAGTACTAGTCCTGAT
TTGTTCCTTTCTCTCTGCCCTACTGTTTTCCTTTTTTTTATTTTCTCCTT
CTTTTCCCCTTATTTTTTCCCTTTTTGTCCTTTTTTTATTCCCCTTGACC
CCCCCTTTATATTTCCATTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_i16.b1 MSMg01no202_i16.b1 CHROMAT_FILE:
MSMg01no202_i16.b1 PHD_FILE: MSMg01no202_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:23 2005
         (325 letters)



>mm_chr2_6976192_6976916
          Length = 725

 Score =  580 bits (300), Expect = e-170
 Identities = 317/324 (97%), Gaps = 3/324 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgagctgaacctatttgtgcaagctctccatgtctttgctcacctaatgcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgagctgaacctatttgtgcaagctctccatgtctttgctcacctaatgcata 264

                                                                       
Query: 65  tttattaaaacctagtatgtgctaagtactatgtgtcccttcggagaccgatagcaggag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattaaaacctagtatgtgctaagtactatgtgtcccttcggagaccgatagcaggag 324

                                                                       
Query: 125 gcggatgattcaggtagcgttcagctttccatgctctgccagggattcccagtgtaccgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcggatgattcaggtagcgttcagctttccatgctctgccagggattcccagtgtaccgt 384

                                                                       
Query: 185 atgagtctgtgggctcttcccatgcatggcgggaggaagagttgtcgagtacatatgctg 244
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 385 atgagtctgtgggctcttcccatgcatggcgggaggacgagttgtcgcgtacatatgctg 444

                                                                       
Query: 245 tgagcacagcaagttcagtggatactgagatttgagcacagtctcagactactttact-- 302
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  
Sbjct: 445 tgagcacagcaagttcagtggatactgagatttgagcacagcctcagacttctttacttt 504

                                   
Query: 303 -ctctctctctctctctctctctc 325
            |||||||||||||||||||||||
Sbjct: 505 tctctctctctctctctctctctc 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)