Query= MSMg01no202_j12.b1 MSMg01no202_j12.b1 CHROMAT_FILE:
MSMg01no202_j12.b1 PHD_FILE: MSMg01no202_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
(310 letters)
>mm_chr2_153021397_153022106
Length = 710
Score = 592 bits (306), Expect = e-173
Identities = 306/306 (100%)
Strand = Plus / Minus
Query: 5 gaattcctcctcttcctttctgactgaaacttacagtctgggcaccacatctaacactgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcctcctcttcctttctgactgaaacttacagtctgggcaccacatctaacactgt 451
Query: 65 gaacagaaagaagaaaaggtccctgggagaaccccagcctgcactgccccatttctgtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaacagaaagaagaaaaggtccctgggagaaccccagcctgcactgccccatttctgtgg 391
Query: 125 acttttccacctccacgtgtcttcactctggcgactgccgtgtcagctggctgtcacaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acttttccacctccacgtgtcttcactctggcgactgccgtgtcagctggctgtcacaca 331
Query: 185 gcctggcagccaattctctctagtctgttgggtgtgctgttctcctgggatgcgctcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gcctggcagccaattctctctagtctgttgggtgtgctgttctcctgggatgcgctcacc 271
Query: 245 actctgaatccactagtctcttgctccagtcactagacaatgcaagcaaaaagttgccca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 actctgaatccactagtctcttgctccagtcactagacaatgcaagcaaaaagttgccca 211
Query: 305 agttca 310
||||||
Sbjct: 210 agttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_j12.g1 MSMg01no202_j12.g1 CHROMAT_FILE:
MSMg01no202_j12.g1 PHD_FILE: MSMg01no202_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:27 2005
(619 letters)
>mm_chr2_152852067_152853083
Length = 1017
Score = 1156 bits (598), Expect = 0.0
Identities = 613/619 (99%), Gaps = 2/619 (0%)
Strand = Plus / Plus
Query: 1 agtgaataaatgaagatttctgtgtttacttaagtgactctcagaccctacaaagaagag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agtgaataaatgaagatttctgtgtttacttaagtgactctcagatcctacaaagaagag 260
Query: 61 caagacactgaaatgaggaagacaccctaagatggctaaactgaggaaaaggctgacacc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 caagacactgaaatgaggaagacaccctaagatggctaaactgaggaacaggctgacacc 320
Query: 121 ctagtaacagccctttcccctttcatactgcagctgagcctgctggctcccctaagtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagtaacagccctttcccctttcatactgcagctgagcctgctggctcccctaagtctt 380
Query: 181 gagtactcaatgtatgataatccaggcatgcaggcattccactatgtaccaggaacgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtactcaatgtatgataatccaggcatgcaggcattccactatgtaccaggaacgact 440
Query: 241 ttctgtgtatcatagccaggtagtaacataagcaatgaatgaaaaaaaaataaggtggat 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttctgtgtatcatagccaggtagtaacataagcaatgaatgaaaaaaa--taaggtggat 498
Query: 301 aggggaccagttgtagggtgaacaacaaaatgtcccatgaagccaggcatggtggtacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aggggaccagttgtagggtgaacaacaaaatgtcccatgaagccaggcatggtggtacac 558
Query: 361 gtctataatcccagcactgggaaggttgtggctgagggcaggggaagcccctctgaacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtctataatcccagcactgggaaggttgtggctgagggcaggggaagcccctctgaacag 618
Query: 421 gccacacatcttagagaagaggcaaaggcttgtaacaaaagcccaggagaaggagaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gccacacatcttagagaagaggcaaaggcttgtaacaaaagcccaggagaaggagaagac 678
Query: 481 agggttgttaagaaccagggactctgggggagtggctggggggatacctcacccacctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 agggttgttaagaaccagggactctgggggagtggctggggggatacctcacccacctat 738
Query: 541 catacatgaggcttgtgtttaatattcagcaccaagtagaaaaacaattgaaatgaaata 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgtacatgaggcttgtgtttaatattcagcaccaagtagaaaaacaattgaaatgaaata 798
Query: 601 naaggaacagcaagcagcc 619
||||||||||||||||||
Sbjct: 799 aaaggaacagcaagcagcc 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space: 613263
Effective search space used: 613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
