CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAGTAAACTTTATCCCTTAAAGCAGAAGAGCATCAGAGATCAT
CAACATTAAGAAGTTATTGACACGAAAATATTTTACAGATACATATCTGA
TATATATATATGAATATATTACATAAATATGAATATATATTACAAAAATT
AATATATATTGTATATTACATATATTCATGTATATGAATATATATTACAT
AAAAACTAAATAGAATACAAATGACTCTATAAAGCATAGGTTAAGAAACT
TAGTATTTCACCAATGGGAGGAGAGGCCCTTGGTCCTGTGAAGGTTCTAT
GCCCTAGTATAGAGGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGTTTG
GTGAGCAGGGGGATGGTGGAGGGGATAGGTANNTNNNNNNTNGTTNNNNN
CCCTTCCCTTTTTTTCCTCCCTTTCCTTTTTCCTTCCCTTTCCCTCCTCT
CTCTTTTTTTTCTTTCCTCCCTCTCCTTTTTTTTTTTTCTCCTTTTTCTT
CTCCCCTTTTTCCCCCCTTTTCTTCTTTTTCCCCTTCTTCCCTTTTCCCC
TTTTTTTTTCTCCTCTCCCCCTTTCCCCTCTTTTTTTTCCCTTTTTTTTT
TTTCTTTTTTCTTCCTCTTTCGCTTTTTTTTCCCCCTTTTTTCTCCCTCT
TTTTTTCTTTTTTCTCCCTCTTCCTTCTTCCTTGG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTTTCTCTTCTATCTGGTTC
TGTATATCTGGATTTCTGTTGACGTCTTTGATCCATTTGGACTTGAGTTT
TCTGCAAGGTAATAGATATGAATCTATATACATTCTTCTACTGCCCAAAA
TTCAATTAGACCCACTCGACTTGTTGTTGATGCTTTCTTTTATCCAGTAC
ATATTTATACCTTTTTAAAATCAAAAGTCAGGTCTCCATAGGTGTGTGGA
TTTACATCTGAGCCTTTGGCTTGATTCCATTGATCAACCTGCTTACATAG
CAATACCATGTGTTTTTTACCACCACCCCACTGTAGTCCTGCTTGAAATC
ATAGATAGTGTTATCTCCAGAAGTTCTTTTATTGTAAAAGATTGGTTTAG
CTATCCTGGGTTTTTTCATATGAAGTTAAGTATTGATCTTTTAAAATCAG
TAAAGAATAGTGTTGAAATTTTGATGAGGATTGCACTAAATCTGTAGATT
GCTTTAGGCAGGATGGCAATTTTTACTATGTTAATCCTGCTGATCCATGA
GCATGGGAGCTCTTTCCATCAATACTAGGTTTTTAATCTTATTTTTTTCA
TGGAAAGTAGATGAACCACATGTCCCCCTCACTCTACTCCTTGTTATTCC
TCAGAACGTCCCCTCTAATCCCAATC

Query= MSMg01no202_n19.b1 MSMg01no202_n19.b1 CHROMAT_FILE:
MSMg01no202_n19.b1 PHD_FILE: MSMg01no202_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:50 2005
         (379 letters)



>mm_chr2_40974685_40975463
          Length = 779

 Score =  580 bits (300), Expect = e-170
 Identities = 357/380 (93%), Gaps = 11/380 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagtaaactttatcccttaaagcagaagagcatcagagatcatcaacattaa 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagtaaaatttatcccttaaagcagaagagcatcagagatcatcaacattaa 264

                                                                       
Query: 65  gaagttattgacacgaaaatattttacagatacatatctgatatatatatatgaatatat 124
           |||||||  || | ||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 265 gaagttaaagagaagaaaatattttacagatacatatctgatatatat----gaatatat 320

                                                                       
Query: 125 tacataaa-tatgaatatatattacaaaaattaatatatat--tgtatattacatatatt 181
           |||||||| |||||||||||  | || ||||||||||||||  |||||||||||||||||
Sbjct: 321 tacataaaatatgaatatat--tgcataaattaatatatatgttgtatattacatatatt 378

                                                                       
Query: 182 catgtatatgaatatatat--tacataaaaactaaatagaatacaaatgactctataaag 239
           |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 catgtatatgaatatatatattacataaaaactaaatagaatgcaaatgactctataaag 438

                                                                       
Query: 240 cataggttaagaaacttagtatttcaccaatgggaggagaggcccttggtcctgtgaagg 299
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 439 cataggttaagaaacttagtatttcatcaatgggaggagaggcccttggtcctgtgaatg 498

                                                                       
Query: 300 ttctatgccctagtatagaggaatgccagggccaggaagcaggagtgggtggtttggtga 359
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 499 ttctatgccccagtatagaggaatgccagggccaggaagcaggagtggttggtttggtga 558

                               
Query: 360 gcagggggatggtggagggg 379
           ||||||||||||||||||||
Sbjct: 559 gcagggggatggtggagggg 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)