BAC Information

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BAC

Clone NameMSMg01-203G09
Chromosome2 (Build37)
Map Location 43,893,293 - 43,893,572
singlet/doubletsinglet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203G09.T7 (MSMg01no203_g09.b1)MSMg01-203G09.TJ (MSMg01no203_g09.g1)
ACCAG388183AG388184
length707715
length of high quality
(start - end)
351 (46 - 396)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no203_g09.b1 PHD_FILE: MSMg01no203_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:32 2005CHROMAT_FILE: MSMg01no203_g09.g1 PHD_FILE: MSMg01no203_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTATTTTAACCTTTCCATTTTCTTTTATTTTTGATACTATAATA
ATATTTACAATATTAATCCCTTTTCCCTTCAAACCTTCCCATGAACCTCT
TCTGGATATTTCTCAAATGCATGGAGGCTTTCTTTATTAACTATAATTGC
ATGCATAGATGCATGTGTATATACATATAGCTTTCTAAATATACCCTATG
AAGTTGCATGTTGTATAACGCTCCTTGTATGTATGTTTTCTGGACTAACC
ATTTGATACTAGATAACCAGTTGGCGTGCTCTTCTCTGTAAAGAACTGTT
CCTCCACTCTGCATTCCTCAGTTGCCTGTAGTTCTCCATGTAGTGGCGAA
GCCTGTGGACATCCCACCGCATGCTTTGACATGTCTATTGGTATCATCAT
TGTTCAGTTCATGTTTAGGCAGTCACTGGTCATTTTTTATAACTCTTTTA
ACTCAGATCTTACAAGTGCTTCATGTTCTTGTCCTCACATACAAAATGAC
ATGCTCACACATCACTCAGAACAGTCTCTAAGCTCTTACTGACATGTTAT
GCAATCTAGCTTATCTGAACGACCACACGACTATAGCATATGTCTTGCCC
GCAATATTGACGCCTATTCCAGTTTGTCCTATGAGTGTACTACACATTCT
CTCTCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAGAAGATAATCGTTGTAAC
ATGAAAATCTATTGCTATTATTGCTTGATTAGTTTCAAGAATTGGGTGGT
ATTTCTTCTGCTGATGATGCAGAGATGTGAATGTAGTCACAAATGAAACT
ACTGTAAAATCTATGCTAATACACCCATTTGCTGATAGGAGTCTGCATGT
ACCTATGTATATAATATGTCCACTGTATGTCAGCGTATTCTTATATAATG
TTGATAGATATTCCAGCCCAGAATAAAGCAAGCATGAATGTGGAATGGAA
ATATAATATCTTTTGTTTGACCACACCTCACTGAGCAACTACTACTTTGT
GTCAAGCAGTCATACCCCCCCACAAAGAAACTAAAAATATGTGGTAGGAC
TCAACAGTTAATCACAGATACTCTACTCTTATGGCATTTATGTTCTAGTT
AGGATCTACTATTACGCTATCGTATGACATATACCAATATGTGATGCATA
TTCCAAGTCGTCATAGTATCTTCCTCTTTACTGCTCATCAATATCCACCA
ATTCTCCCTACTATTATTTTACTATGCCCCTTTAACCCTTCAACCCTGAT
TCCCTTTCCCCTTTTACCTTTACTACCTCCTTTGTTTTTTTTACTTCTTC
TCTTCCCCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_g09.g1 MSMg01no203_g09.g1 CHROMAT_FILE:
MSMg01no203_g09.g1 PHD_FILE: MSMg01no203_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:32 2005
         (284 letters)



>mm_chr2_43893093_43893776
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 276/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaagaagataatcgttgtaacatgaaaatctattgctattattgcttgattagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tctaaagaagataatcgttgtaacatgaaaatctattgctattattgtttgattagtttc 260

                                                                       
Query: 61  aagaattgggtggtatttcttctgctgatgatgcagagatgtgaatgtagtcacaaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaattgggtggtatttcttctgctgatgatgcagagatgtgaatgtagtcacaaatga 320

                                                                       
Query: 121 aactactgtaaaatctatgctaatacacccatttgctgataggagtctgcatgtacctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactactgtaaaatctatgctaatacacccatttgctgataggagtctgcatgtacctat 380

                                                                       
Query: 181 gtatataatatgtccactgtatgtcagcgtattcttatataatgttgatagatattccag 240
           |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gtatataatatgtccattgtatgtcagtgtattcttatataatgttgatagatattccag 440

                                                   
Query: 241 cccagaataaagcaagcatgaatgtggaatggaaatataa 280
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 cccagaagaaagcaagcatgaatgtggaatggaaatataa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)