BAC Information

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BAC

Clone NameMSMg01-204A16
Chromosome2 (Build37)
Map Location 180,735,632 - 180,866,003
singlet/doubletdoublet
Overlap geneCol20a1, Chrna4, Kcnq2
Upstream geneLsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1
Downstream geneEef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204A16.T7 (MSMg01no204_a16.b1)MSMg01-204A16.TJ (MSMg01no204_a16.g1)
ACCAG388575AG388576
length764744
length of high quality
(start - end)		346 (70 - 415)229 (128 - 356)
definitionCHROMAT_FILE: MSMg01no204_a16.b1 PHD_FILE: MSMg01no204_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:26 2005CHROMAT_FILE: MSMg01no204_a16.g1 PHD_FILE: MSMg01no204_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,865,658 - 180,866,003)(180,735,632 - 180,735,860)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAAGATCCGCGG
AATTCAGAGAATCTTATGGAATTTTCCCAAAAGATGGAAATACCTCAGAG
AGTTGTGGTTTCCAGAGAAACCTGTGTTTCTCATGGGGCCTGGGTTTGCC
CACCTTCTCAGGCCTGCTCAGTTTCTAACCCTCACTGATATCTTAAAGGG
CACTGGAGAGAAAGAATAATTGCAGTCTCTTTGCTCTGGTTATGTGTAAA
TCTTTAAGCATCCTTGCATCTGTAAAGAAATGATGGATTAGCAACTAGCC
AGGGAGCATTCTGGGCAGGGTTGCTGATGAGAGCAGAGAAATCTCATTTT
TATGGATACCAGCATGAGTCGGACATGTAAAGCCATCTATATGGAGACTT
AGAAGGACACACAGCCCCCCACCACCCTGGAGAACTTTGACATGGAGACT
ACTAGGTCCTGGGAATGCACCCAGATGCTGAATGTCTGAAATGACTTGAC
TCTGGAGTGAATCTGATGAGTCAGTGACAGTGTCTGATAGTACAGCTGGA
TTCCAGTGTTAGGGTCTTTAGTGTCTTTCTATGAGCAAAATCTATCGGAT
TTTGCTTATATTCCTGACCCCTGCACACTCTTTTTCGACCAGCTTTTACT
CTTCCCGTCCTTCACGTTTATCTCTTTTACATTCAACCTCCTTGCCTCTT
TCTTACAACTATTTATCACACCCTCTCATATTCTTCATTACAACCTTTAT
TATTCTCTAACACG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACATTGCCTTGCCACTGGATAGCTGCAG
CAAGCAGAAGCCCTTATCCCGCCTGGACTTGTCCTCGGAGACCCCCAACA
GCCTGCAGGTCAACTGGACACCACCAAGTGGCCATGTCCTCCATTACCGG
CTCAACTACACACTGGCCTCAGGCTCTGGACCAGAGAAATCGGTGAGTCT
GTATAAAGAGCTAGGAGCCATCCAGGGATTTAGGTGTGGATCTTATCTGT
CTACTGAGGGTAGCAGCAGCTTCTTTGTGGAGGGAAAGATGGGCAGAGGG
AGTATATTCTTGAAAGGACAACGAAGTCTAAGAGGAGAGGCTCAGGGGCC
TCCTCCTTCCCCACCCCNCTGTAACAAGAACCAGGAGCCATGCCGTGCTT
CGTGATCTGATGTCTGCCACGAAGTACAGGGTCCTGGTCTCAGCTGTCTA
CAGATTAGGGGAGAGCATGGCAGTGTCTGCCACATACCGCACAGGTTAGC
GTTCACAATGCTGCATCTCCTTCTTAATACCTTGCTCCAATCAAGACCCA
AAACCCAATTATAAGTCCTAGCCTATTCATTCATCCCATTAGATCCTAAT
TTATAACACCCTCATTTAATAATACTTCTAACCCTAAACAATTCATAATT
CCACAATACCCCATCTACATTTCATCATACCCCCTCCTTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_a16.b1 MSMg01no204_a16.b1 CHROMAT_FILE:
MSMg01no204_a16.b1 PHD_FILE: MSMg01no204_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:26 2005
         (346 letters)



>mm_chr2_180865458_180866203
          Length = 746

 Score =  661 bits (342), Expect = 0.0
 Identities = 345/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattttcccaaaagatggaaatacctcagagagttgtggtttccagagaaacctgtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aattttcccaaaagatggaaatacctcagagagttgtggtttccagagaaacctgtgttt 487

                                                                       
Query: 61  ctcatggggcctgggtttgcccaccttctcaggcctgctcagtttctaaccctcactgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctcatggggcctgggtttgcccaccttctcaggcctgctcagtttctaaccctcactgat 427

                                                                       
Query: 121 atcttaaagggcactggagagaaagaataattgcagtctctttgctctggttatgtgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atcttaaagggcactggagagaaagaataattgcagtctctttgctctggttatgtgtaa 367

                                                                       
Query: 181 atctttaagcatccttgcatctgtaaagaaatgatggattagcaactagccagggagcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atctttaagcatccttgcatctgtaaagaaatgatggattagcaactagccagggagcat 307

                                                                       
Query: 241 tctgggcagggttgctgatgagagcagagaaatctcatttttatggataccagcatgagt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tctgggcagggttgcagatgagagcagagaaatctcatttttatggataccagcatgagt 247

                                                         
Query: 301 cggacatgtaaagccatctatatggagacttagaaggacacacagc 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cggacatgtaaagccatctatatggagacttagaaggacacacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_a16.g1 MSMg01no204_a16.g1 CHROMAT_FILE:
MSMg01no204_a16.g1 PHD_FILE: MSMg01no204_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:26 2005
         (229 letters)



>mm_chr2_180735432_180736060
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtcctcggagacccccaacagcctgcaggtcaactggacaccaccaagtggccatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcctcggagacccccaacagcctgcaggtcaactggacaccaccaagtggccatgt 260

                                                                       
Query: 61  cctccattaccggctcaactacacactggcctcaggctctggaccagagaaatcggtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccattaccggctcaactacacactggcctcaggctctggaccagagaaatcggtgag 320

                                                                       
Query: 121 tctgtataaagagctaggagccatccagggatttaggtgtggatcttatctgtctactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtataaagagctaggagccatccagggatttaggtgtggatcttatctgtctactga 380

                                                            
Query: 181 gggtagcagcagcttctttgtggagggaaagatgggcagagggagtata 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtagcagcagcttctttgtggagggaaagatgggcagagggagtata 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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