CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTTTTCATCTACATTTTCAAAATTTCCACAGTGGAATTTTTC
AAAGGGAATGGCTTTAGTGGGCAAAGTGCCAGCGGTGCAAGTGTAGGGTT
GAGAGACAAAGGGATCCCTGGGCCTTGGGCCAGGCAGTCCAACCCAAGCT
CAGGGTCAGTGAGACCTTGCTTCAAAAGATGAGGGAGAGTGATGAGGAGG
CAGAGGGGTGAAGCACTGGCTTCCCACGCCTCTCCATGGGCAAGGGGATT
TACACATACAGACATACACATACAGCCCTTGCTATATGTTTAAGGGTTGT
GGGATCTGTTGTGTGTCTCCTTTTCATGCCAGTTACTACCAATGTTACTA
CTGATGTTTCTCTGGTGTTTTTCTTCCTAACTTTGATCCATTTAGACAGA
AGTTTCCTGACTTTATGAGTCCTTCCAGAGTTTTCTAGCTCAACACCTTC
TGATCTTTGCTGTCTCCTTTTAGTCTCTTATGCTTCTTTTTGTTTCTGTT
TGTCTATTTCTTTTAAAGCTGAATGCGTTGTCTATGATGTTTCTTTTGTA
ATTCATCAATCCGAGGGCTAAGGCACTTCCTTACATGCAGCTGTAGCCAT
CATAATTTTTTTTTTCACAAATAGGACTTTTTATTTGTCACCATTAAAAA
TCTGGATTTTACACTGATTCTTGGACTGGCGGTTC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAANGTGAGGNGAC
CNANAGAAGTTGCGCGAATTCAGNTGGNGAAGNGNCNCCACCGCCCCATC
CTCCCTGCAGTTTTGTTCTAAAAAACAGAGAATGTTAGATGGCTGTGGAT
GGTCTTAACACAAGGTCTTAGCCTTTGATTTCTGTGCTGTCATGGCTTGT
GGTGTTAGTTCTGACATTTACTCATTTTCAAACCATGTGTAGCATTTTAT
AGGCTAGAAAACTAGGAGTCCTGGCTACTGAGCAAGTCTCGAATCTTAAA
TGCTGCCTATAGTTATAATTTAAGGCTNNNAAAAACTATATACCCTCCCC
TCCTTTTTTTTGTCCCCCCCCCCCCCCCACATCTACATTGGTACCAGCAT
TCTTAGCCTCCATGTGTCTCCCTATGATGTGTTAGCCTGTTGTGCCCCAT
GGCTAGGGCTCTGCTGCTCCCTTGACCACATTTCTGGTTCAGCATTAGTA
ATAATAGCTCTGTTGCCTAAGCACATTGCCAAGGGGAGTCTTTATTTGTC
TCACTTCATTCTCACAGCAGACTTCTGAGCAAAGTTCTGTTGGACCCATT
TTACAGATGATTAAGTAGGGCACCAGAATGCACAGCTGACAGTTATCTCT
TGTTCTGAAGTACAAATACTTGCCTTCCAGTCCTCCCTCAAGGCCCAGCC
TTGGCCTCTTAGCTGATTCCTAGCTTTTT

Query= MSMg01no204_o01.b1 MSMg01no204_o01.b1 CHROMAT_FILE:
MSMg01no204_o01.b1 PHD_FILE: MSMg01no204_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:35 2005
         (690 letters)



>mm_chr2_34420887_34421976
          Length = 1090

 Score = 1309 bits (677), Expect = 0.0
 Identities = 683/685 (99%)
 Strand = Plus / Minus

                                                                        
Query: 6    aattcattcttttcatctacattttcaaaatttccacagtggaatttttcaaagggaatg 65
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 aattcattcttttcatctacattttcaaaatttccacagtggaatttttcaaagggaatg 1031

                                                                        
Query: 66   gctttagtgggcaaagtgccagcggtgcaagtgtagggttgagagacaaagggatccctg 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gctttagtgggcaaagtgccagcggtgcaagtgtagggttgagagacaaagggatccctg 971

                                                                        
Query: 126  ggccttgggccaggcagtccaacccaagctcagggtcagtgagaccttgcttcaaaagat 185
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 970  ggccttgggccaggcagtccaacccgagctcagggtcagtgagaccttgcttcaaaagat 911

                                                                        
Query: 186  gagggagagtgatgaggaggcagaggggtgaagcactggcttcccacgcctctccatggg 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gagggagagtgatgaggaggcagaggggtgaagcactggcttcccacgcctctccatggg 851

                                                                        
Query: 246  caaggggatttacacatacagacatacacatacagcccttgctatatgtttaagggttgt 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  caaggggatttacacatacagacatacacatacagcccttgctatatgtttaagggttgt 791

                                                                        
Query: 306  gggatctgttgtgtgtctccttttcatgccagttactaccaatgttactactgatgtttc 365
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 790  gggatctgttgtgtgtctccttttcacgccagttactaccaatgttactactgatgtttc 731

                                                                        
Query: 366  tctggtgtttttcttcctaactttgatccatttagacagaagtttcctgactttatgagt 425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  tctggtgtttttcttcctaactttgatccatttagacagaagtttcctgactttatgagt 671

                                                                        
Query: 426  ccttccagagttttctagctcaacaccttctgatctttgctgtctccttttagtctctta 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  ccttccagagttttctagctcaacaccttctgatctttgctgtctccttttagtctctta 611

                                                                        
Query: 486  tgcttctttttgtttctgtttgtctatttcttttaaagctgaatgcgttgtctatgatgt 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tgcttctttttgtttctgtttgtctatttcttttaaagctgaatgcgttgtctatgatgt 551

                                                                        
Query: 546  ttcttttgtaattcatcaatccgagggctaaggcacttccttacatgcagctgtagccat 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  ttcttttgtaattcatcaatccgagggctaaggcacttccttacatgcagctgtagccat 491

                                                                        
Query: 606  cataattttttttttcacaaataggactttttatttgtcaccattaaaaatctggatttt 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490  cataattttttttttcacaaataggactttttatttgtcaccattaaaaatctggatttt 431

                                     
Query: 666  acactgattcttggactggcggttc 690
            |||||||||||||||||||||||||
Sbjct: 430  acactgattcttggactggcggttc 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no204_o01.g1 MSMg01no204_o01.g1 CHROMAT_FILE:
MSMg01no204_o01.g1 PHD_FILE: MSMg01no204_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:35 2005
         (250 letters)



>mm_chr2_34413608_34414257
          Length = 650

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  atctacattggtaccagcattcttagcctccatgtgtctccctatgatgtgttagcctgt 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 atctacattggtaccagcattcttagcctccatgtgtctccctatgatgtgttagcctgt 273

                                                                       
Query: 74  tgtgccccatggctagggctctgctgctcccttgaccacatttctggttcagcattagta 133
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 274 tgtgccccatggctagggctctgctgctcccttgaccacatttctggtttagccttagta 333

                                                                       
Query: 134 ataatagctctgttgcctaagcacattgccaaggggagtctttatttgtctcacttcatt 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ataatagctctgttgcctaagcacattgccaaggggagtctttatttgtctcacttcatt 393

                                                                    
Query: 194 ctcacagcagacttctgagcaaagttctgttggacccattttacagatgattaagta 250
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctcacagcagacttctgagcaaagttctgttggacccattttacagatgattaagta 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)