BAC Information

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BAC

Clone NameMSMg01-205H08
Chromosome2 (Build37)
Map Location 78,851,706 - 78,851,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205H08.T7 (MSMg01no205_h08.b1)MSMg01-205H08.TJ (MSMg01no205_h08.g1)
ACCAG389444AG389445
length731747
length of high quality
(start - end)
287 (70 - 356)55 (195 - 249)
definitionCHROMAT_FILE: MSMg01no205_h08.b1 PHD_FILE: MSMg01no205_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:20 2005CHROMAT_FILE: MSMg01no205_h08.g1 PHD_FILE: MSMg01no205_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAGTGCTCACAGTCAAGCTGGTTTCCCATTTTTTTTAATATTTC
AAGTTAAACCATTTTCTTTGACACTTGGCGCACAGTACTCACAAATTATG
GACCTTGGAAAACCACATTCTTTATTAAATAAACATTTAGGCATTGGAAT
TACAATGATAATTTTAATCAATGTTGCCATAAATGTAAGGACAGGAACTG
TGTGTCTTCAAATCTTCCTTTGTTGTGTATGCTGGCACTCCCTGAAAGAG
ACACAATTTCAATATTTCATATATTAAAACATTGCTGAGATATTTCACTC
TATAAGTGTTATTTTGCCCCACACCCCCAAAGCTTTAAACTCTGGATACA
ATAAGGGTATGCCCCCCCACCATCCCATGAAACATGCTATAATCACATTT
TACACCAGGTACTTTGAAGCTAAAATTTCCAACAGTCTATACAAGGAAAA
ACTATGCATGAGATTGACAAAGATGGTTGGTATCCTATAATATCACAATG
CTAGTCAGGACATACAACACTAATGCTTAGGCGGCTGAGGGTGGAGACTT
GCCATGAGTCCAAGGCCTTACCAGATTGTATTAGTAAAACTCAGCCTAAA
ATACCAAGAACTGACTGCGCACATACCACAAATAAAAAAATATAAACATC
TTGTTCAGCTTGCTCTCTCTACTGAATGTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCATTGGAATACTATTCAGTCATT
AGAATAGGTAAAATTTTGTCACCCCCACTATACAGATGGGGGCAGAGATA
GAAATAGTGAAGTAAGCCAGGTACAGAGAGATGGGTTCCACCCAATCTCA
GCAATATGCGAAATTTACTAAAGCCAGTCTCAGAAACCGAGAGTAGAGTG
GTGTTGGCAGAGGCTAGCAATAGCAGTATGGAGGCAGATGAGGGGATTGA
CCAGCATCATACTTGGACTGAATTTAAGTAGGGACTAGTAGGGTGACTCC
AGATTTAATTTTTTTTTTAGCACACCCCACTCAAGATTAAAAGTGACCTG
AAGACTTTGAAAGTCCCCCCCCTAAAGCAATGATTAATAATTTAATAGGA
ATAGGTAACCACATTCAAACATCGTATAATATATACATAGTTTAAAATAT
TACTCTGTTCCTTTATTACGTAACTTTGCTTAACTACGCCATTATCGAAT
TTCATGATATCCTTTCTACCGTTTTCATGGCCTTTTGCGTTCATCCATCT
CCCTTTATTATTCGCCCTCCCCTTTTCCCGTTTCCGCCACATTTACTTTT
TTCCGCCCCCCCCTTTTCCCCCCTTTGCTTTTTCCCCCTTTCCACTTTGT
TCATACCCCTTTTTCTTTTTCACTTTTTCCTTTTCTTTGTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_h08.b1 MSMg01no205_h08.b1 CHROMAT_FILE:
MSMg01no205_h08.b1 PHD_FILE: MSMg01no205_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:20 2005
         (287 letters)



>mm_chr2_78851506_78852192
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagctggtttcccattttttttaatatttcaagttaaaccattttctttgacacttggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 487 caagctggtttcccattttttttaatatttcaagttaaaccattttctttgaaagttggc 428

                                                                       
Query: 61  gcacagtactcacaaattatggaccttggaaaaccacattctttattaaataaacattta 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 427 gcacagtactcacaaattatggaccttggaaaaccaaattctttattaaataaacattta 368

                                                                       
Query: 121 ggcattggaattacaatgataattttaatcaatgttgccataaatgtaaggacaggaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggcattggaattacaatgataattttaatcaatgttgccataaatgtaaggacaggaact 308

                                                                       
Query: 181 gtgtgtcttcaaatcttcctttgttgtgtatgctggcactccctgaaagagacacaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtgtcttcaaatcttcctttgttgtgtatgctggcactccctgaaagagacacaattt 248

                                                          
Query: 241 caatatttcatatattaaaacattgctgagatatttcactctataag 287
           |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 247 caatatttcagaaattaaaacattgctgagatatttcactctataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)