TCGATNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGGAA
TTCATTTATAGTAGGTTTTTTTTTTTGTTATTTGTTTTTTGGGGGTTTGT
TGTTGNNGCCNNTTTTCCCCCCCAAAAAAACNAAAAAAAACCCCATAACC
TATTCCCCCACCACACCCCTATCAAACCACCTACTTACCCCCCACCCCAA
CAATTACCCCAACCCTCCCTACCACTTCTCCCCCACCACACACCCCCCAA
CTATCTTAAACTTATTAACCACCCTTCAAAAAACAATAAATACCACCCCC
CCCCCCCCCCCCCCCCTTTTTTTTTTCCCCCCCCTACAAACCACTTTACC
ACCCCCACATTTTTTTTTTCCCCCCCACACAAAACAACCACAAAAAAAAT
AAAAATATGGGTTGGTACGCGCCATCCCCCAAAAAAAAAAAAACAAAGGG
AGAGAATACAGAAAAACAACGCCCTACAGACGCAACCCCCCCCACAAAAA
AAATAAAAACCCACAAAACCAACACCCCCGGCGAAATAATCCCCACCGCG
ACAGAAACACAATACCAGAGCAGCGCGCAAACACAAAATAGATCATCCAA
CAAGCGCAAAAAAGAACGACAAAAAAAACATGGAAAAGCAGAACACCCCC
CATAACCATCCCCTCGCGGATTCTCACACTCCCCCACCCCTAACCCGAAT
AACACGACATAACCCCCCCATGCGCTATATACCGCCGCCAAGAGAAGCGA
TTCAAGGCGCTCAACACACGGTAATAAGGCCCCGATTCAACCCTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCCTCAGGCTTGCCCTGCCCT
GTAGTCCTCATCCATGTGTTTATTAAGAATCTGAGTTTGAGTGGAATATA
CAAATGTATTTTTGCTTAAGATGAGACTGAACTTTCTGAAATGTAAGCAG
TTTAGAAAGAGATAGTTAACTTGAGAAATAAGTTTAGGAAAAATAAGCAT
TCAAGTTTAGAATATGCTTAAATGAAAGGTTATCATAGTTTTGTTAATTT
CAAATTAGTAAAGGATTAGAAAATAAAAAGTCAAAAACTTACATTCATGA
TTCCTTGGAAGCTTGAATTTTTTCAATAACACCCTAATATTCACGAGTAG
AAAAAATTAAAACATTTATTTATATATAGCCTTAAAACATATTGTTTGAA
CATGTAGACTAGAAAGAGAATTATTTAATGCAGACAATGTTATAAATAAA
CTTAAACTTAATCAATTTTCTGTTATAGTTATGTTTGAAGGTAAGTTGAT
GTGAGATTGACAGAAAAATTATGTCATGCTCAAGGGCCTGATTAGAGAGA
GAGTGTCTTTATTTCTCAAGCCACAGTCCTTTCAGGAAGAAATCCAGGAA
GTCCTTCCAGGGAGAGTGAAGAATGTCAGGCATTGCCAGTAGTCCTTTTA
ACTTCCTTACAAGTGAATTTCAAGTTACTGTTTTCCN

Query= MSMg01no205_j05.g1 MSMg01no205_j05.g1 CHROMAT_FILE:
MSMg01no205_j05.g1 PHD_FILE: MSMg01no205_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:29 2005
         (661 letters)



>mm_chr2_83778424_83779484
          Length = 1061

 Score = 1122 bits (580), Expect = 0.0
 Identities = 621/638 (97%), Gaps = 7/638 (1%)
 Strand = Plus / Plus

                                                                       
Query: 23  ctgtagtcctcatccatgtgtttattaagaatctgagtttgagtggaatatacaaatgta 82
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctgtagtcctcatctaagtgtttattaagaatctgagtttgagtggaatatacaaatgta 282

                                                                       
Query: 83  tttttgcttaagatgagactgaactttctgaaatgtaagcagtttagaaagagatagtta 142
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 283 tttttgcttaagatgagactgaactttctgaaatgtaagaagtttagaaagagatagtta 342

                                                                       
Query: 143 acttgagaaataagtttaggaaaaataagcattcaagtttagaatatgcttaaatgaaag 202
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 343 acttgagaaataagtttaggaaaaataagcattcaggtttagaatatgcttaaacgaaag 402

                                                                       
Query: 203 gttatcatagttttgttaatttcaaattagtaaaggattagaaaataaaaagtcaaaaac 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gttatcatagttttgttaatttcaaattagtaaaggattagaaaataaaaagtcaaaaac 462

                                                                       
Query: 263 ttacattcatgattccttggaagcttgaattttttcaataacaccctaatattcacgagt 322
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 463 ttacattcatgattccttggaagcttgaattttttcaataacaccctaatattcacaagt 522

                                                                       
Query: 323 agaaaaaattaaaacatttatttatatatagccttaaaacatattgtttgaacatgtaga 382
           ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 523 agaaaaaattaaaacatttatttatata--gtcttaaaacatattgtttgaacatgtaga 580

                                                                       
Query: 383 ctagaaagagaattatttaatgcagacaatgttataaataaacttaaacttaatcaattt 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctagaaagagaattatttaatgcagacaatgttataaataaacttaaacttaatcaattt 640

                                                                       
Query: 443 tctgttatagttatgtttgaaggtaagttgatgtgagattgacagaaaaattatgtcatg 502
           ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||
Sbjct: 641 tctgttatagttatgtttgaag-----ttgatgtgagattgacagaaaaattatgtcatg 695

                                                                       
Query: 503 ctcaagggcctgattagagagagagtgtctttatttctcaagccacagtcctttcaggaa 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 696 ctcaagggcctgattagagagagagtgtctttatttctcaagccacagtccttacaggaa 755

                                                                       
Query: 563 gaaatccaggaagtccttccagggagagtgaagaatgtcaggcattgccagtagtccttt 622
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaaatccaggaagtccttccaaggagagtgaagaatgtcaggcattgccagtagtccttt 815

                                                 
Query: 623 taacttccttacaagtgaatttcaagttactgttttcc 660
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 816 taacttccttacaagtgaatttcaagttactgatttcc 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)