Query= MSMg01no206_i10.b1 MSMg01no206_i10.b1 CHROMAT_FILE:
MSMg01no206_i10.b1 PHD_FILE: MSMg01no206_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:44 2005
(595 letters)
>mm_chr2_47335434_47336428
Length = 995
Score = 1120 bits (579), Expect = 0.0
Identities = 591/595 (99%)
Strand = Plus / Plus
Query: 1 ttgttgacagtacttgttattagcatttttattaaaatactgaaatattactataaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttgacagtacttgttattagcatttttattaaaatactgaaatattactataaattt 260
Query: 61 atgaaatggttacagtatgaaactcagatggaatcatgtacaagtgagatatcagattag 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 atgaaatggttacagtatgaaactcagatggaatcatgtactagtgagatatcagattag 320
Query: 121 gtcctggaagggacacaatataatgtaaccactttacaggattgaataatggcttcttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctggaagggacacaatataatgtaaccactttacaggattgaataatggcttcttac 380
Query: 181 atagctaaaaaatattattatataatcattctttctagacaatctaattaattacaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagctaaaaaatattattatataatcattctttctagacaatctaattaattacaaaat 440
Query: 241 atattcacataaaacatatgcctaatatctataatggattaatttataaccgccaaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 atattcacataaaacatatgcctaatatctataatggattaatttataattgccaaaata 500
Query: 301 tcaaaggtgtcctttaaaggatcggttagtaagtaaacattaccatggggcagtatttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 tcaaaggtgtcctttaaaggatcggttagtaagtaaacattaccatggggcggtatttgt 560
Query: 361 ttttaattggatattttatttatttacatttcaaatgttatccccttcctcagtttcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttaattggatattttatttatttacatttcaaatgttatccccttcctcagtttcccc 620
Query: 421 tctacaacccccttataccatccccccttaccgtgcttctttaagggtgaccctcaaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctacaacccccttataccatccccccttaccgtgcttctttaagggtgaccctcaaccc 680
Query: 481 acctacctactcccactaagtggccctagtattcctctacactggggcatcaagccttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctacctactcccactaagtggccctagtattcctctacactggggcatcaagccttca 740
Query: 541 caggaccaagggcccctcttattgatgccagataaggccccttcagctccttcag 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggaccaagggcccctcttattgatgccagataaggccccttcagctccttcag 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_i10.g1 MSMg01no206_i10.g1 CHROMAT_FILE:
MSMg01no206_i10.g1 PHD_FILE: MSMg01no206_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:44 2005
(593 letters)
>mm_chr2_47506812_47507805
Length = 994
Score = 1002 bits (518), Expect = 0.0
Identities = 575/594 (96%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 1 agtactgaatacaaaaatatacaccaaagccaaatgttcactatggtccagaagaaaatg 60
|||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct: 776 agtactgaatacaaaaatatacaccaaatccaaatgttcactagggtgcagaagaaaatg 717
Query: 61 acttgtttctcaccagatatttaaaatcatattttatatttatttctaaataatcacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acttgtttctcaccagatatttaaaatcatattttatatttatttctaaataatcacttt 657
Query: 121 ttctgtaattttag-aaaaaaattagatgatgccaataattttaaactacaaatatgtgc 179
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 656 ttctgtaattttagaaaaaaaattagatgatgccaataatttcaaactacaaatatgtgc 597
Query: 180 aattaaaaatatattaatcatttgtaggatttacatgcgcatataaacacactgatacac 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 596 aattaaaaatatattaatcatttgtaggatttacatgagcatataaacacactgatacac 537
Query: 240 attcatacctttttctaatttatacttgttgtgatacaatgtaaatgaaaaaaaggatat 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 536 attcatacctttttctaatttatacttgttgtgatacaatgtaaatgataaaaaggatat 477
Query: 300 ccatcatcattatgctaagtagcattactaattttactagcaccttacccttaaaagaag 359
||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 476 ccatcttcattatgctaagtagcatcactaattttactagcattttacccttaaaagaag 417
Query: 360 tgtagccatacacatattccttagcctgcttcctgtatattaaatagaaagtagctttac 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgtagccatccacatattccttagcctgcttcctgtatattaaatagaaagtagctttac 357
Query: 420 ttatgatctgattatttgaattaaattattctgttacaaaactaaaaattatagaatttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 356 ttatgatctgattatttgaattaaattattctgttacaaaactaaaaattatagcatttt 297
Query: 480 taaaaattaaaagccaatggttagcatattacattcatctttatttcatgtgtataagtg 539
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct: 296 taaaaattaaaagccaatggtcagcgtattacattcatctttattttatgtgtataagtg 237
Query: 540 ttatttatcagtacataagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 593
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttatttttcagtacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
