BAC Information

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BAC

Clone NameMSMg01-206I15
Chromosome2 (Build37)
Map Location 82,230,003 - 82,230,376
singlet/doubletsinglet
Overlap geneA130030D18Rik
Upstream geneLOC100040704, Zfp804a, LOC100041308
Downstream geneEG624362, LOC433550, LOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206I15.T7 (MSMg01no206_i15.b1)MSMg01-206I15.TJ (MSMg01no206_i15.g1)
ACCAG390117AG390118
length743759
length of high quality
(start - end)
372 (46 - 417)239 (126 - 364)
definitionCHROMAT_FILE: MSMg01no206_i15.b1 PHD_FILE: MSMg01no206_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:45 2005CHROMAT_FILE: MSMg01no206_i15.g1 PHD_FILE: MSMg01no206_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAATTAAAGTTCCCACATTGGACAGAACTAGAAATGGACTGGG
AGGTGACAGAAATGGTATGGTCACCACAGGAAGAATAACCAAAACCTTTC
AAGCCAAGTTTCAACAACAGCAGCTCAGACACATTTTCATAAAGAAGCTT
GCTATACCTTCTTCATAAGCTCTGTTGCAAAAAGGGTCATTTTAGGCAGT
AGATAGATGAATTGTCTAATTGGGAAAAGACACATTGTTTGTCCTGTAAC
TTGACTCTTGGCTTTGGACAGACTTTTAAACACTTAAAAAAAAAAACAAT
AAACAAACTATTCAGGGGCAGATCCCTGCAACCCTCATCATTCACTCAGA
ATTCCTGACCCAGAACCGCCCCGCCTAAAAGAACTACAGGGACAAAAAAT
GAGGACTGAAGGAAAGCGGAAGCAAAACCCAGCCCAACTTGGGATCCATC
TTGTGGACCAAGGCTTGATGCTACTATGTTCTGATGATGTGCTTACAGAC
GGGACCCTACTATGGCTGTCCTCTGTCAGGCCCTATCGGAAGTTGACTGA
GACAGAAGCAGATACTTACACCCAACCATTTGAGTGAAGCCAAGGAACCC
CTATGGTTGAATTAGAGGAAGGATTGAAGAAGCTGAAAGGGAGAGCCACC
CCATAGAAAGACCAACAGTGTTCACTAACCCAGACTCCAGGGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTAAACCCATCTGGTCCTGG
GCTTTTTCTTGGTTGGGAGACTATCAATGACTGCTTCTATTTCTTGAGGG
GTTATAGGAATTTTTAGATGGTTTATTGATACTTTTTAAACTTTGGCACC
TGGTATGTGTCTAGAAAATTGTCCATTTTATCCAGATTTTCCAATTTAGT
TGAGTATAAACTTTTATAGTAGGTTCTGATGATTTTTTGGTTTTCCACGG
GTTTCATTGTTAGGTATCCCTTTTCATTTCTGATTTTATTAATTTGAATA
CTGTCTTTGTGCTCTCTAATTACCCTCCCCAAAGGTTTCTCTGTCTTGTT
GATTTTCTCTTTTACCCCCCCCCTGAATTCATTGATCCTTTATATAGTTC
TTTTTGCTTCTATTTAGTTGATTACAGACCTAACGTTGATTATTTCCTGC
CGGATACTCCTCTTGGGTGTATTTGCTTCTTTTTGCGCCAAAGTTTTCCC
GTGTGCTGCCCCGCCGCTAATGAAAGTTATTTCCAGCTTTTTTTTCTCTA
GAACCACCCCTCTCTTTTTTACTCCCCTCTTATTCATTTTTTTCAATGTA
GTCCCCGTTATCCCGGCTCTTTTTTTTTTTTTTACTTTTTTTCCCCCTCT
TTTTTCTCCCTTTCTCCATTTCTTCTTTTCCCCCCTCTTCCGCCCCTTTT
TATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_i15.b1 MSMg01no206_i15.b1 CHROMAT_FILE:
MSMg01no206_i15.b1 PHD_FILE: MSMg01no206_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:45 2005
         (372 letters)



>mm_chr2_82229799_82230571
          Length = 773

 Score =  623 bits (322), Expect = 0.0
 Identities = 358/374 (95%), Gaps = 8/374 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaattaaagttcccacattggacagaactagaaatggactgggaggtgacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaattaaagttcccacattggacagaactagaaatggactgggaggtgacag 264

                                                                       
Query: 65  aaatggtatggtcaccacaggaagaataaccaaaa-cctttcaagccaagtttcaacaac 123
           ||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 aaacgatatggtcatcacaggaagaataaccaaaaacctttcaagccaagtttcaacaac 324

                                                                       
Query: 124 agcagctcagacacattttcataaagaagcttgctataccttcttcataagctctgttgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcagctcagacacattttcataaagaagcttgctataccttcttcataagctctgttgc 384

                                                                       
Query: 184 aaaaagggtcattttaggcagtagatagatgaattgtctaattgggaaaagacacattgt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaagggtcattttaggcagtagatagatgaattgtctaattgggaaaagacacattgt 444

                                                                       
Query: 244 ttgtcctgtaacttgactcttggctttggacagacttttaaacacttaaaaaaaaaaa-- 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 445 ttgtcctgtaacttgactcttggctttggacagacttttaaacacttaaaaaaaaaaaaa 504

                                                                       
Query: 302 -----caataaacaaactattcaggggcagatccctgcaaccctcatcattcactcagaa 356
                |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||
Sbjct: 505 aaaaacaataaacaaactattcaggggcagatccctgtaagtctcatcattcactcagaa 564

                         
Query: 357 ttcctgacccagaa 370
           |||||| |||||||
Sbjct: 565 ttcctgccccagaa 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)