BAC Information

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BAC

Clone NameMSMg01-206K03
Chromosome2 (Build37)
Map Location 83,891,003 - 83,891,316
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206K03.T7 (MSMg01no206_k03.b1)MSMg01-206K03.TJ (MSMg01no206_k03.g1)
ACCAG390175AG390176
length722861
length of high quality
(start - end)
318 (45 - 362)198 (80 - 277)
definitionCHROMAT_FILE: MSMg01no206_k03.b1 PHD_FILE: MSMg01no206_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:52 2005CHROMAT_FILE: MSMg01no206_k03.g1 PHD_FILE: MSMg01no206_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCAAATCTATGGACCCTTTTTTTCATTATTTGTTGCTATATGAT
ACATTAGGAATTCTCTCTATAAGCCCTAGAAACTATTCTAACCCAGTCAG
ATAGATGTTTAAGTTTTAGAAATTTAAACATAACATAATTTTTCAAATTT
TCTTATCACGAGAACTATGAAGTAAGAATATTGCATGAATAAAATTTAAT
ATTTGATTTTTAAAATTCAATCTGAACTCAATAACCCATATGGAATCCCA
TATTTTAAAATCACTTTGATACAAATAAATGAATGACTATGGGCTAGTAA
ATCATAATTTGATTGACTGTCTCCCTGCCCCGCATCATTGAGATGACTAT
TTTATGTGATTCTGCGCCCCCTTAAGTTAGCTGTTTAATTTTGACTTAGG
AATACTAGGTAAAATGTCTTATTAACATCTAGCTCTTTCTAACTTGTGAA
TGTCTTCAACACAGGTACGGCGTAATACAGATCTTTAATGACTGCCTGGC
ACATGGCTCAATAATCACGTTTTAATTATCCTTACCTTTTTTTTGATACG
ACTGACCTTTTTTTATCCCCCCCCCTTATAGAGTGTCTATATTACAGTGC
ACACCCTTACGCGTTTACTGAATTTTACTGTAAAGTGAAAGAAGCCTGTG
GCAACACTTATCATGAAGCTCC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACCATCCACCCTCCTC
TTTGCCTCTGAGAGGGCTCTCCACCCCACCCCCACCCCTCCCCACACCCC
TCCCCCTCCGCCACCCCTCTTCTCTGGGGCATCAAGTTTCTACAGGAAAC
TTGCCTTTACCATTGAGGTCAGGCAAGGCAGTCCTCTGCTATATATGTGC
TGGGGAGGCAGGGGTGGGGTGGGGTGGTGCTCTTTTCTTCCCGATTTTTT
CTTTTCTCCCCCCCCCCCCCCTTTTTTTTTTCCCCCCCCCACACCGCTAT
TAATAAAAATTTTTTAGTACCTCCCAAAACAAACCCCCCTTGTTTTTTTT
TTTTAATAAAATCTTTTTTTTTTCCCCCCCAAAAAAAAAAAAAAAAATCC
CTTTCTTCGCGGGCGTGGCCCTATTTTACCCCTCCTCTCAACATTATCAA
ATATATATACACATTTCCTTTAAACCCCCCACTACCTATCTATTATTCCC
CATATTCTTATTACCACAACCCCATTTAATTTTTCTCCCCTAATAAAATA
CACCGCCCCTCTCAAAAAAAATACTTTTTATTTTTATCTCCCTCATCTTT
TACCACCCAGTGTTTCCTCCTCCCCCTTTTTTTTTTCTTCCCCCTCTACC
CTTTTTCGTACTCTCTTTTCTTCCAATACTTTCCCTCCCTCTTCCCCCCC
CCTCCTTATTTCATAATATCTTTTCATAAATTCTCTCTCCTTTCTTTTTC
TTAACGTGTTCTCAGATTACCTTTATTATCACCCCAGCATACCCCGCCCT
TATATCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_k03.b1 MSMg01no206_k03.b1 CHROMAT_FILE:
MSMg01no206_k03.b1 PHD_FILE: MSMg01no206_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:52 2005
         (318 letters)



>mm_chr2_83890924_83891641
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcaaatctatggaccctttttttcattatttgttgctatatgatacattagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaattctttcaaatctatggaccctttttttcattatttgttgctatatgatacattagg 334

                                                                       
Query: 65  aattctctctataagccctagaaactattctaacccagtcagatagatgtttaagtttta 124
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aattctctctataagtaatagaaactattctaacccagtcagatagatgtttaagtttta 274

                                                                       
Query: 125 gaaatttaaacataacataatttttcaaattttcttatcacgagaactatgaagtaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaaatttaaacataacataatttttcaaattttcttatcacgagaactatgaagtaagaa 214

                                                                       
Query: 185 tattgcatgaataaaatttaatatttgatttttaaaattcaatctgaactcaataaccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tattgcatgaataaaatttaatatttgatttttaaaattcaatctgaactcaataaccca 154

                                                                       
Query: 245 tatggaatcccatattttaaaatcactttgatacaaataaatgaatgactatgggctagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tatggaatcccatattttaaaatcactttgatacaaataaatgaatgactatgggctagt 94

                         
Query: 305 aaatcataatttga 318
           ||||||||||||||
Sbjct: 93  aaatcataatttga 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)