BAC Information

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BAC

Clone NameMSMg01-207C02
Chromosome2 (Build37)
Map Location 14,859,106 - 14,859,514
singlet/doubletsinglet
Overlap geneCacnb2
Upstream genePtpla, Stam, 2010003H20Rik, Mrc1, Slc39a12, LOC100041164, LOC625335, LOC625342
Downstream geneLOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207C02.T7 (MSMg01no207_c02.b1)MSMg01-207C02.TJ (MSMg01no207_c02.g1)
ACCAG390477AG390478
length1,2511,213
length of high quality
(start - end)		416 (52 - 467)720 (72 - 791)
definitionCHROMAT_FILE: MSMg01no207_c02.b1 PHD_FILE: MSMg01no207_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:40 2005CHROMAT_FILE: MSMg01no207_c02.g1 PHD_FILE: MSMg01no207_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTTTNNNNNNGGGCAGTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTGTACCTCACTGCCCTCTGGGAATTGTGACCTCCTTG
TTTCTGCTCTTAGTAGAAGCTCACCTTTCCCAGGGAGAAGGCCTTGGTGG
ATAAGCTGTTAGCCGGGAAGTGCAGCAAAGTCCCTGACACACCCTTTGAA
GGATCAGATTTAGTGTTGATTACATTATCCCTGTGTTAAATGATAGGATT
CTAACAGTGAGATGTCTTTTCTATCCCCCTACAATTCTCAGCATGTCTCA
TACCAGCACTCCTGATACCACTTCTAATAATTTTCCTACTATATTCTAAG
CATTTTTTTCATTTTCTGTGAATATGAGCTCATAGTCCTGTAATGTTATG
AAATTCTGACTTTCTTGACTTAGAGTTTTCAAATACCTTCTTGTTAATGG
GATCAGTCCCTCCATATTAGTTCCACTTCTGATGCCAGTCCAAAGCAGTG
GGTCCCCAGGTTAGACACTACTTATCTAATTTGGCTACAGTGAAGGGAGG
TTTCTATACCTGCTCCCTGGATGCAATGATTCTGATTCGTAAGAATGATT
CATAGAGAGTTGGAGAGATAGTCCAGTGGTTAAGAGCACTGGCCACTCTC
CCAGAGTTCCTGAGTTCAATTCATAGCCATCACATGGCAGCTCGTAATCC
AATGTCCTCTTCTGGTCTGCAGGCATGCATGCATACATACCTGTATACAT
AAAAAATAAATCTTTAAGAAAAGAAAGCAAAAAAAAAAAAAAAAAGACTC
ATGGAGCTACAGAACCCAGTTTCCTGCAGAGATGACCAATGAGAGAGGTA
TATAAAGTAAGTCCGTGGGACTATGGACAGAGCTTCCATTCTCAGGGTGC
CTTACCTCCATGAATTTATCATAGATTGGATCATTGATCTCTATCAATTA
AAAACCCCTTTATCTACTATGGTTATTATTGAGGGGGGGGCAAAAGCTCT
AATCCCCCAATTATTGGTGGGAACCCCCCCGCACTTTTGATCGTGAGGCT
TAATTTGGGGGGCCTGGGCCCATTACCACGAATTTTTTCCTTTTACAAAA
AAAAAAAATTACTTTTTGAAAAAACAAAAAGTTTTGGAATTTATAATAAA
AAAAGGGGGAATTTCCAAAAAGATTTCTGGTGTGAATGGTTTCCCTCTAG
CCCCTTCTTATTATAAGAAATCCTTTTTGGGAAACCCCTTCCCCTCCCCG
G

NTTTCTTGAGGCGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCATTAAACCCATCTTGTCCTGGGCTTT
TTTCAGTTGGGGGACTATTAATGACTGCTTCAATTTCTGTAGGGGTTATG
GGACTGCTTAGATGGTTTATCTAGTCCTGTTTCAACTTTGGCACCTGGTA
TGTGTCTAGAAAGTTGTTCATTTTATCCAGATTTTCCAATTTAATTGAGT
ATAAATTTTTTTAGAAGGATCTGATGATTTTCTGTATTTCCATGGTTCCG
TTGTTATGTCTCCCTTTTCATTTCTGATTTTATTAATTTGGATACTATCT
CTGTGCCCTCTGGTTAGTCTGCATAAGGATTTATCTATCTTGTTGATTTT
TCTCGAAGAACCACCTTATGGTTTGGTTGATTCTTTGTATAGTTGTTTTG
TTTCTACTTGTTTGATTTCAGCTCTGAGTTTGATTATTTCCTGCCCTCTA
CTCCTCTTGGGTGTATTTACTTCTTTTTGTTCTAGAGCTTTCAGATGTAC
TGTCTACATCTAGCTTACTGCTAGTGTAAGCTCTCTATAGTTTGGAGGCA
CTCAGAGCTGAGTTTTCCTCTTACCACTGCTTTGATTGTGTCCCATTAGA
CTGAGTATGTTGTGCCTTCATTTTCATTACATTCTAAAGTCTTTAATTTA
TTTCTTTATTTTTTCCTTGAGTAAGTTATCATTGAGTGGGGTGTTGTTCA
GCATCCATATTTATGTGTGCTTCCATTGTTTCTGTTGATATTGAAGACCA
GCCTTAGTCCGTGGTGATTTGATAGCATGCTTGGGATTATTNCAATCTTC
TTGTATCTGTTGAGGTATGTTTTGTGACCCATTTTATTGTTCATTTTGAA
AAAGGTACCATGAAATGCTGAAAAAAAAGTGTATTCGTTTGTTTTTAGTA
TAAATGTTCTATAAAATTTCTGGTTAAATCATTTGGGTTCATAAATTTCC
AATTAAATATTTCCTTTTCCTCGGGTTTTGGTTCTGTTTCTCCCGAAAAT
TTCCCCTTGTCTTCATCCTGTTCTGTTTTAAAACCTTTCATCATCTTTTA
TTTTTCTATCTCATCTTTCATTCTCTCTCTACTCTACTTTTCATTCTCTA
TCTTATATCCTCTTTCATCTTATATCTCTTTTATCTCTTTCTCCTTTATA
TCTCTCTTCGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_c02.b1 MSMg01no207_c02.b1 CHROMAT_FILE:
MSMg01no207_c02.b1 PHD_FILE: MSMg01no207_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:40 2005
         (416 letters)



>mm_chr2_14858902_14859717
          Length = 816

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgtacctcactgccctctgggaattgtgacctccttgtttctgctcttagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 205 gaattcagtgtacctcactgccctctgggaattgtgacctccttgttcctgctcttagga 264

                                                                       
Query: 65  gaagctcacctttcccagggagaaggccttggtggataagctgttagccgggaagtgcag 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 gaagctcacctttcccagggagaaggccttggtggataagctgttagctgggaagtgcag 324

                                                                       
Query: 125 caaagtccctgacacaccctttgaaggatcagatttagtgttgattacattatccctgtg 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaagtccctgacacaccttttgaaggatcagatttagtgttgattacattatccctgtg 384

                                                                       
Query: 185 ttaaatgataggattctaacagtgagatgtcttttctatccccctacaattctcagcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaatgataggattctaacagtgagatgtcttttctatccccctacaattctcagcatg 444

                                                                       
Query: 245 tctcataccagcactcctgataccacttctaataattttcctactatattctaagcattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcataccagcactcctgataccacttctaataattttcctactatattctaagcattt 504

                                                                       
Query: 305 ttttcattttctgtgaatatgagctcatagtcctgtaatgttatgaaattctgactttct 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 ttttcattttctgtgaatatgagctcagagtcctgtaatgttatgaaattctgactttct 564

                                                            
Query: 365 tgacttagagttttcaaataccttcttgttaatgggatcagtccctcca 413
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacttagagttttcaaataccttcttgttaatgggatcagtccctcca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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