Query= MSMg01no207_f13.b1 MSMg01no207_f13.b1 CHROMAT_FILE:
MSMg01no207_f13.b1 PHD_FILE: MSMg01no207_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:10 2005
(868 letters)
>mm_chr2_40641525_40642791
Length = 1267
Score = 1135 bits (587), Expect = 0.0
Identities = 622/634 (98%), Gaps = 1/634 (0%)
Strand = Plus / Minus
Query: 235 aactcattattaaaatttattagtaaaatgattcatattttctttcaggattccagtttt 294
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1267 aactcattattaaaatttattagtaaaatgattcatattttttttcaggattccagtttt 1208
Query: 295 ataagttacattctcttaaccaatgttatgtgcattgtcctcaagctggtgtggtttaca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ataagttacattctcttaaccaatgttatgtgcattgtcctcaagctggtgtggtttaca 1148
Query: 355 agaacatgagactgacagtctccgaacaaaaagataggaatgagtaaatgccatataaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 agaacatgagactgacagtctccgaacaaaaagataggaatgagtaaatgccatataaat 1088
Query: 415 atatgttatttaaataattagaaacctgccattgtgctatctacaatggaaaaggcagag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 atatgttatttaaataattagaaacctgccattgtgctatctacaatggaaaaggcagag 1028
Query: 475 taggaggaacaaaatttgggtgcatggcatagcaatctgagaatgctactaaaacaagta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 taggaggaacaaaatttgggtgcatggcatagcaatctgagaatgctactaaaacaagta 968
Query: 535 agtcatgctatttctcactgccatcatttgacagtggccagttctaaataatgtcacaga 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 agtcatgctatttctcactgccatcatttgacagtggccagttctaaataatgtcacag- 909
Query: 595 cacaatccatatagacaagaacagtataatgagcatggggcaagttgcaaacctagtgct 654
|||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 908 cacagtccatatggacaagaacagtataatgagcatggggcaggttgcaagcctagtgct 849
Query: 655 tatcatgaatgcaaggatcattatcaataaacttggcctcaaattgatataattacagga 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 848 tatcatgaatgcaaggatcattatcaataaacttggcctcaaattgatataattccagga 789
Query: 715 agacacagagttcagtgagttagagaagctctcctctagcatagaanaccttttaagaat 774
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct: 788 agacacagagttcagtgagttagagaagctctcctctaggatagaaaacctttttagaat 729
Query: 775 gatgaaaatatgaagaaagagtactggacaggataggaatctcccactgtgaggaatccc 834
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 728 gatgaaaatatgaagaaagagtattggacaggatagaaatctcccactgtgaggaatccc 669
Query: 835 tcactgagattctgtgttgcctaaaatcatgttc 868
||||||||||||||||||||||||||||||||||
Sbjct: 668 tcactgagattctgtgttgcctaaaatcatgttc 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 868
Length of database: 1267
Length adjustment: 10
Effective length of query: 858
Effective length of database: 1257
Effective search space: 1078506
Effective search space used: 1078506
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no207_f13.g1 MSMg01no207_f13.g1 CHROMAT_FILE:
MSMg01no207_f13.g1 PHD_FILE: MSMg01no207_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:10 2005
(385 letters)
>mm_chr2_40626513_40627297
Length = 785
Score = 565 bits (292), Expect = e-165
Identities = 358/386 (92%), Gaps = 15/386 (3%)
Strand = Plus / Plus
Query: 1 acatataaaagacaagcatgacaccatgccgc-tgcaatctgccactcaggaggcaagga 59
||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 209 acatataaaagccaagcatgacaccatgcc-cttgcaatttgccactcaggaggcaagga 267
Query: 60 cagacaaatccctggagctccctgacttggccaatctacatgaaacataagccccccgga 119
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||
Sbjct: 268 cagacaaatccctggagctccctgac-tggctaatctacatgaaacataagccccagggt 326
Query: 120 cactgagagatcctaacgcaaaacagtaaggtggagagtacgggggtggtgggggagaca 179
||||||||||||||||| ||||||||||| ||||||||| |||| |||| |||||
Sbjct: 327 cactgagagatcctaactcaaaacagtaaagtggagagt------gtgg-ggggaagaca 379
Query: 180 gctagtgtcaatttatgaactccacatacacatgcacaccaaatgtacacacaaaaaatc 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctagtgtcaatttatgaacttcacatacacatgcacaccaaatgtacacacaaaaaatc 439
Query: 240 ttacaacagattgtatagtactatacatatattatataatatatacacacaatactccaa 299
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttacaacagattgtataaaactatacatatattatataatatatacacacaatactccaa 499
Query: 300 taattactaaggtctttgtgaaataaaataaaataaaataaaataaaataaaataaaata 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 taattactaaggtctttgtgaaataaaataaagtaaaataaaataaaataaaataa---- 555
Query: 360 attggagggaaaagtcagaagggaca 385
|||||||||||||||||||||||||
Sbjct: 556 -ttggagggaaaagtcagaagggaca 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
