BAC Information

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BAC

Clone NameMSMg01-208P03
Chromosome2 (Build37)
Map Location 102,690,245 - 102,844,410
singlet/doubletdoublet
Overlap geneCd44
Upstream geneLOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
Downstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208P03.T7 (MSMg01no208_p03.b1)MSMg01-208P03.TJ (MSMg01no208_p03.g1)
ACCAG391658AG391659
length712777
length of high quality
(start - end)		310 (46 - 355)283 (137 - 419)
definitionCHROMAT_FILE: MSMg01no208_p03.b1 PHD_FILE: MSMg01no208_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:55 2005CHROMAT_FILE: MSMg01no208_p03.g1 PHD_FILE: MSMg01no208_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,844,104 - 102,844,410)(102,690,245 - 102,690,525)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTGAGTTAGCAGCAGTCTATGCCAGTGCCTACCAGCGGACTG
AGCTGGATCAAGCAGTACTGCCTTTCTGGTTTTCCCCCAAAGGTGGTGTT
GACTTTAGGTGTGCTAGGTTGCGTAAGGGCAACCACAACCAGGGTTATAT
GATGTTGTGCCCAGCAGCTCCACCCTGATGCCAAAGGATTAATGATGGAA
GCACCTGAGGGCACAAGACTAACTGATACTGAGTATTGTTATTTTTTATA
AAACTCCTCAATGGTAATGTGAGAGTAGCCAAGAAGTCCCATTCAGGATG
TGGCCCTTTATTTAATACCCCTCCCACTCAGACCGTGTAAGTTCCCATCC
CAACCCTTTCCAAACGCCCGCAAACTTACTTTCCAGGTAGAGTTATGTTT
GGTCTACAGATTATTTTTTTGTGTATGAGAGCTATGTCTGCATGTATACC
TCCATTCCAGAAGAGGGCCTTAGAATTGATTATGCATAATTGTGAGCCAC
CATGTGGTTGCTGAAAATTGATCTCAGGACCTCTGGAAGAACAGCTGTTA
TTCTTAACAGTTGAACCATCTCTCCCCTGGTTTACAGATTCTTAATGGAC
CTGGTTTTACAGTGAGTATGTGTGTTGTTCTTCCTCCACATAGACCTGGA
CTGCTGGCATTA

ATTTTGATTTCTTTGCCTTTTTTTTTTTTTTTTTACTTTTTCATTCCCCN
NNNNNNNTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGACCAATAA
GAAGGAACTGATGACACACCTCCAGGCAGATCCTTCCAAAAATAACATTT
ATAATAAGCAGCCAGTGGGATAACCCAAGCCTACAGAGCCTGTTGTTCTT
GCTAGTTTTCCCAGTTGCCACCCACTGAGCACCCTAAAGGGAGGAATGAG
CTGGCTAAGCCAGGCACAGCTTCTTCCATGTCCTCAGCCAGCCCAGCTCT
TGACCTCTGCTCCCCTGCATGCTAATCTCCATCCACTCCCTCTCACTGTG
TCTCAGCCCTCCACCCATTTTTTTTTACCACCCCCTCGCCAAGCTCCTCA
TGGGACTTAAAAGGTAGGATTCTATCCCCAATCTTAAATAGCATAGCTCT
CTTGCTACCTGCTACATTCAAGTAAACTTAAACTGGTGGGCAAACTGGCC
TCTCCTCCACACCCATTAAAAAGAACTAAGCCACATGCTCTCTAAAAAGG
GGAAGGCAAAAGCTCCTTTTCCCTCGAATCCTGAGCTGCGTTTTAGGTAC
GCTTCGGTCACTCCCTTTCTTTGATTTCTGGGCTAGGATGCTGTACCCGA
GAAGGGAGATCTGCCTCTGACCCTCCAAACCCCTCGTATTGTCTGGAGCA
CAGAAGACACTCGATACGGAGTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_p03.b1 MSMg01no208_p03.b1 CHROMAT_FILE:
MSMg01no208_p03.b1 PHD_FILE: MSMg01no208_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:55 2005
         (310 letters)



>mm_chr2_102843901_102844610
          Length = 710

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttctgagttagcagcagtctatgccagtgcctaccagcggactgagctggat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggaattccttctgagttagcagcagtctatgccagtgcctaccagcggactgagctggat 451

                                                                       
Query: 64  caagcagtactgcctttctggttttcccccaaaggtggtgttgactttaggtgtgctagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caagcagtactgcctttctggttttcccccaaaggtggtgttgactttaggtgtgctagg 391

                                                                       
Query: 124 ttgcgtaagggcaaccacaaccagggttatatgatgttgtgcccagcagctccaccctga 183
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 390 ttgcgtaagggcaaccacaaccagggttatatggtgttgtgcctagcagctccaccctga 331

                                                                       
Query: 184 tgccaaaggattaatgatggaagcacctgagggcacaagactaactgatactgagtattg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgccaaaggattaatgatggaagcacctgagggcacaagactaactgatactgagtattg 271

                                                                       
Query: 244 ttattttttataaaactcctcaatggtaatgtgagagtagccaagaagtcccattcagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttattttttataaaactcctcaatggtaatgtgagagtagccaagaagtcccattcagga 211

                  
Query: 304 tgtggcc 310
           |||||||
Sbjct: 210 tgtggcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no208_p03.g1 MSMg01no208_p03.g1 CHROMAT_FILE:
MSMg01no208_p03.g1 PHD_FILE: MSMg01no208_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:55 2005
         (283 letters)



>mm_chr2_102690045_102690727
          Length = 683

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgaccaataagaaggaactgatgacacacctccaggcagatccttccaaaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatgaccaataagaaggaactgatgacacacctccaggcagatccttccaaaaataac 260

                                                                       
Query: 61  atttataataagcagccagtgggataacccaagcctacagagcctgttgttcttgctagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttataataagcagccagtgggataacccaagcctacagagcctgttgttcttgctagt 320

                                                                       
Query: 121 tttcccagttgccacccactgagcaccctaaagggaggaatgagctggctaagccaggca 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttcccagttgccacccactgagcaccctaaagggaagaatgagctggctaagccaggca 380

                                                                       
Query: 181 cagcttcttccatgtcctcagccagcccagctcttgacctctgctcccctgcatgctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcttcttccatgtcctcagccagcccagctcttgacctctgctcccctgcatgctaat 440

                                                    
Query: 241 ctccatccactccctctcactgtgtctcagccctccaccca 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccatccactccctctcactgtgtctcagccctccaccca 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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