BAC Information

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BAC

Clone NameMSMg01-209A03
Chromosome2 (Build37)
Map Location 21,347,326 - 21,347,895
singlet/doubletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209A03.T7 (MSMg01no209_a03.b1)MSMg01-209A03.TJ (MSMg01no209_a03.g1)
ACCAG391702AG391703
length727715
length of high quality
(start - end)
318 (6 - 323)571 (58 - 628)
definitionCHROMAT_FILE: MSMg01no209_a03.b1 PHD_FILE: MSMg01no209_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005CHROMAT_FILE: MSMg01no209_a03.g1 PHD_FILE: MSMg01no209_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGGG
GTTATTTGATATTCTGAAGTCCACCTTCTTGACCTCTTTATATATGTTGG
ATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACT
TTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAG
CCATTGCTGTTCTGTTCAGGAATTTTTCCTTTGTGCCCATATCTTCAAGG
CTTTTCCCCACTTTCTCCTCTATTATTTTTCACCCCCTCTCGCCTTTATG
TGAAGTTCCTTGATCCACTTAGATTTTACCCCACCACAAAAAAATAAGTA
TGGATCGATTCGCATTCTTCTACACGATATCAACCAGTTGTGCCAGCACC
AATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTATCTCCCTTG
TCGAAGATCTAGTGCACTTACCGTGTGTTGGCTTCATTTTTTGCCTCCTC
CCTTCTATTCTATCGGTCTCTTTTGTTCTGCCCTATTTTCCCCTATCCCA
GTTTTTCTTTAACAACCTTTTCTCTTACTTTACTCCCTTTTTTTTTCCCT
CTTCTCTTTTCTTACCACAATCTTTTTTCCTATCCTCGTTCATTCCATTC
TCTTACTATTCTTATCTCCTATTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATGCAGTAAGAACGGTGTTATAAGAATTTATTATTTCACTTC
TAAGTTAATTACTTCAAAACTTAATGATTCCCTCATGGAAGCATTCAATC
ATGAACTTTTCAGGGCTCCTTGATGACACATGAGTCCCAGATACTAGTCA
AACCTCTTGAACATGTTATTTTCCCATAAAAAAAAAGTTAAAAAGTCCAA
TTAATATAGACTGGAATACCAATTTAGAAATACCTAGAATTGTTTCCTAT
GGTTCCTATAATTTATCAGTCTGATGTGTAAATAGTTAATAAACTGACAA
ATGGCATTTATTTGCTGGTGGATAAGAATGAGTAAATTTCATAATCTTTT
TTCAAAGGGAAACCTCTTTCAAATGGTTTAGGCCATCAACAAGTCAGAAC
CACTTTCTATGTGGAACATTCCAGATAACTATGAGAGATGCACTGTGTGC
TTAGAAAGCATCATCAACTGGGAAACTCTGCCATGTTTTACCAGTATCTC
CTAGCTTCTCTCCCTCCATGTAGCCAAGTCCCTTGTACATTGGGCTAGAC
TGGAGGGAGGGATGCTTGGGGAGGTGGGGGACAGTTGGATGCCCTGCTTA
TCCCTTGTTAGTGATGCCTGTGTGCCCCAGAACCTATTTCGAATACCTCT
GTATAACTACCGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_a03.g1 MSMg01no209_a03.g1 CHROMAT_FILE:
MSMg01no209_a03.g1 PHD_FILE: MSMg01no209_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:00 2005
         (571 letters)



>mm_chr2_21347126_21348095
          Length = 970

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%), Gaps = 1/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcagtaagaacggtgttataagaatttattatttcacttctaagttaattacttcaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aatgcagtaagaacggtgttgtaagaatttattatttcacttctaagttaattacttcaa 711

                                                                       
Query: 61  aacttaatgattccctcatggaagcattcaatcatgaacttttcagggctccttgatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aacttaatgattccctcatggaagcattcaatcatgaacttttcagggctccttgatgac 651

                                                                       
Query: 121 acatgagtcccagatactagtcaaacctcttgaacatgttattttcccataaaaaaaaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 650 acatgagtcccagatactagtcaaacctcttgaacatgttattttcccat-aaaaaaaag 592

                                                                       
Query: 181 ttaaaaagtccaattaatatagactggaataccaatttagaaatacctagaattgtttcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttaaaaagtccagttaatatagactggaataccaatttagaaatacctagaattgtttcc 532

                                                                       
Query: 241 tatggttcctataatttatcagtctgatgtgtaaatagttaataaactgacaaatggcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 531 tatggttcctataatttatcagtctgatgtgtaaatagttaataaactgacaaatggtat 472

                                                                       
Query: 301 ttatttgctggtggataagaatgagtaaatttcataatcttttttcaaagggaaacctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttatttgctggtggataagaatgagtaaatttcataatcttttttcaaagggaaacctct 412

                                                                       
Query: 361 ttcaaatggtttaggccatcaacaagtcagaaccactttctatgtggaacattccagata 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 ttcaaatggtttaggccatcaacaagtcagaaccactttctatgtggatcattccagata 352

                                                                       
Query: 421 actatgagagatgcactgtgtgcttagaaagcatcatcaactgggaaactctgccatgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actatgagagatgcactgtgtgcttagaaagcatcatcaactgggaaactctgccatgtt 292

                                                                       
Query: 481 ttaccagtatctcctagcttctctccctccatgtagccaagtcccttgtacattgggcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttaccagtatctcctagcttctctccctccatgtagccaagtcccttgtacattgggcta 232

                                          
Query: 541 gactggagggagggatgcttggggaggtggg 571
           |||||||||||||||||||||||||||||||
Sbjct: 231 gactggagggagggatgcttggggaggtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space:   538560
Effective search space used:   538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)