BAC Information

Click to search

BAC

Clone NameMSMg01-209F19
Chromosome2 (Build37)
Map Location 52,324,344 - 52,324,629
singlet/doubletsinglet
Overlap geneCacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F19.T7 (MSMg01no209_f19.b1)MSMg01-209F19.TJ (MSMg01no209_f19.g1)
ACCAG391913
length754748
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no209_f19.b1 PHD_FILE: MSMg01no209_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:28 2005CHROMAT_FILE: MSMg01no209_f19.g1 PHD_FILE: MSMg01no209_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXX
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTACTCAGTAAACCCATCTC
CAAACCCTGTTTTCTTCTGTGAGAGTCACACAGGGCCTCACTTCTCAGGA
CAGCTCAGGTGGCAGCTGACATGACCTAGAGTTGGTGTTTTGCTTGGGTC
CCTGTCAAAGACTCTGTCTGGTGGGCTCAGTATGTGGACAGTCCCCGGGG
TCCCTTCCTCTACCTGGGCTCCTGTGCCATCTTCTGCTTGCCCTGTGCTG
ATGACACCAGGGAGCTATGACAGACTATCCTCTAGTGTTCAAAAGAAACG
GTGTGCCAGTGGTTTGNCTCATCCCCGTGACCAANGCTGGAGAGGAAGCC
AAGCCACACAGACCCAGTGCCCCCTGGATAGAAAAAACACTGCTCTCTGT
GAAGCGCCAATTTCATATATGTTAGAATTCTTCAAAAGCCTTCAGGCAGA
GCAAGTTCTGCTAGTGTTGTCGTCGTTTTGAGATAATCTTGATCTGTAGT
CCAGGCTTGTCTTCACAACTGCTGAGGCAGTTCTGCACCAGCTCCATGCC
CTATTGCTAGAGTTGCAGCTTCGTGTCACCATGTCTGGACGAAGCCATCT
CTTGCCCCAAGCTCTCTTTTTCAGTTTGACTTTTCTTTTCAGCAAGATAC
ACCCCGTGCTATTTAAGGCTACCTTTTGCTTTATCCTATTGGCAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f19.g1 MSMg01no209_f19.g1 CHROMAT_FILE:
MSMg01no209_f19.g1 PHD_FILE: MSMg01no209_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:28 2005
         (287 letters)



>mm_chr2_52324144_52324830
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtactcagtaaacccatctccaaaccctgttttcttctgtgagagtcacacagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cacagtactcagtaaacccatctccaaaccctgttttcttctgtgagagtcacacagggc 427

                                                                       
Query: 61  ctcacttctcaggacagctcaggtggcagctgacatgacctagagttggtgttttgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcacttctcaggacagctcaggtggcagctgacatgacctagagttggtgttttgcttg 367

                                                                       
Query: 121 ggtccctgtcaaagactctgtctggtgggctcagtatgtggacagtccccggggtccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtccctgtcaaagactctgtctggtgggctcagtatgtggacagtccccggggtccctt 307

                                                                       
Query: 181 cctctacctgggctcctgtgccatcttctgcttgccctgtgctgatgacaccagggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cctctacctgggctcctgtgccatcttctgcttgccctgtgctgatgacaccagggagct 247

                                                         
Query: 241 atgacagactatcctctagtgttcaaaagaaacggtgtgccagtgg 286
           ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 atgacagactagcctctagtgttcaaaagaaacggtgtgccagtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)