BAC Information

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BAC

Clone NameMSMg01-209F21
Chromosome2 (Build37)
Map Location 52,324,345 - 52,324,629
singlet/doubletsinglet
Overlap geneCacnb4
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a
Downstream geneOTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209F21.T7 (MSMg01no209_f21.b1)MSMg01-209F21.TJ (MSMg01no209_f21.g1)
ACCAG391916AG391917
length747734
length of high quality
(start - end)
307 (61 - 367)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no209_f21.b1 PHD_FILE: MSMg01no209_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:28 2005CHROMAT_FILE: MSMg01no209_f21.g1 PHD_FILE: MSMg01no209_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXGAACTACAAAGCAATAGTAATAAAACTGCGTGGTATTGGT
ATAGAAACAGACAGGTTGATCAATGCCATCAAATCAAAGCCGCAGAAATA
AACCCACATACCTACAGACAAATGATATTGGTCTAACTGGATGTTTCCAT
GTAGAATAATAAAAATAGATCCATATTTATCACCCTGCACAAAATTCAAA
TCCTAGTGACTTGAAGACCTCAATATAAAACCAGATACACTAAATCTAAT
AGAAGAGAAAGTGGGAAATAGCCTTGAGCACACTGGTAAAGGAGACAATT
TCCTTAACAGAACACCATTGTATCAGCTTCTCACATTAACAATTGATAAA
TGGACCTCATGAAACTGAAAAGCTTCTATAAGGCAAAGGAAACTATCATT
AGGACAAAATGGCAGCCTACAGATTGGGAAAGGATCTTCACCAACCCTAC
ATCTGACAAGGGCATATATATATATATATATATATATATACATACATACA
TACATACATATATATATATATATATACATACATACATACATACATATATA
TATATGAAGTTAGATATCAACAACCCAAAAAACCCAATTTAAAAACGAGG
TAAAGAGCTAAACAGAATTTTTAACAGAGAATTCTCAACAAAGGAATCTT
GAATGGCCGAGAAACACTTAGAAACGTTCAACGTCCTTAGTCATCAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTACTCAGTAAACCCATCTC
CAAACCCTGTTTTCTTCTGTGAGAGTCACACAGGGCCTCACTTCTCAGGA
CAGCTCAGGTGGCAGCTGACATGACCTAGAGTTGGTGTTTTGCTTGGGTC
CCTGTCAAAGACTCTGTCTGGTGGGCTCAGTATGTGGACAGTCCCCGGGG
TCCCTTCCTCTACCTGGGCTCCTGTGCCATCTTCTGCTTGCCCTGTGCTG
ATGACACCAGGGAGCTATGACAGACTATCCTCTAGTGTTCAAAAGAAACG
GTGTGCCAGTGTTTTTTTTTATCCCCCCCCCCCCCACCTGGAGAGGAGTC
CAAGCCACACAGACCCAGTGCTGCTTGAATGACAGAGCCGCTGCTCTCTG
TGAAGCGCCAATTTCATATATGTTAGAATTCTTCAAAAGCCTTCAGGCAG
AGCAAGTTCTGCTAGTGTTGTCGTCGTTTTGAGATAATCTTGATCTGTAG
TCCAGGCTTGTCTTCACAACTGCTGAGGCAGTTCTGCACCAGCTCCATGC
CCTATTGCTAGAGTTGCAGCTTCGTGTCACCATGTCTGGACGAAGCCATC
TCTTGCCCCAAGCTCTCTTTTTCAGTTTGATTTTTCTTTTCAAGCAAGAC
AAAACCTGGGTTATTTAAGGCTACCTTTGCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_f21.g1 MSMg01no209_f21.g1 CHROMAT_FILE:
MSMg01no209_f21.g1 PHD_FILE: MSMg01no209_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:29 2005
         (285 letters)



>mm_chr2_52324145_52324829
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtactcagtaaacccatctccaaaccctgttttcttctgtgagagtcacacagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacagtactcagtaaacccatctccaaaccctgttttcttctgtgagagtcacacagggc 426

                                                                       
Query: 61  ctcacttctcaggacagctcaggtggcagctgacatgacctagagttggtgttttgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcacttctcaggacagctcaggtggcagctgacatgacctagagttggtgttttgcttg 366

                                                                       
Query: 121 ggtccctgtcaaagactctgtctggtgggctcagtatgtggacagtccccggggtccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggtccctgtcaaagactctgtctggtgggctcagtatgtggacagtccccggggtccctt 306

                                                                       
Query: 181 cctctacctgggctcctgtgccatcttctgcttgccctgtgctgatgacaccagggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctctacctgggctcctgtgccatcttctgcttgccctgtgctgatgacaccagggagct 246

                                                        
Query: 241 atgacagactatcctctagtgttcaaaagaaacggtgtgccagtg 285
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 245 atgacagactagcctctagtgttcaaaagaaacggtgtgccagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)