BAC Information

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BAC

Clone NameMSMg01-211A02
Chromosome2 (Build37)
Map Location 81,316,294 - 81,316,670
singlet/doubletsinglet
Overlap genenone
Upstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211A02.T7 (MSMg01no211_a02.b1)MSMg01-211A02.TJ (MSMg01no211_a02.g1)
ACCAG392905AG392906
length1,2171,225
length of high quality
(start - end)
350 (43 - 392)384 (73 - 456)
definitionCHROMAT_FILE: MSMg01no211_a02.b1 PHD_FILE: MSMg01no211_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:46 2005CHROMAT_FILE: MSMg01no211_a02.g1 PHD_FILE: MSMg01no211_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTCATTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTCATGATTATCTGGTTTCATCCAAAAGGCATGGGTCACTTCTCCAC
ATCTGACCTCTGTAGCACTCTAGGTTTTCCTTGACTCTACTCCACTGCTG
CTGCTTTTCTTGGTGATATCCCATGGTACTGGCACCTCCAACTCCTGGAA
GCTTTTACTGCAACTAGGCTTCACCAATAGCCTCTTATAGGCTCCTTTCA
TGGTGCCAAGCCTCAACTTCTTTACATGACTCCTTTATCCTGGGCCATTA
ACTGCAACTGAGGCTGCAACTTCACCAATGGCCTTCCCTGGACTCCCACA
GTGCCAAGCCTCAGATGCTCTTCATGACCCTTCATGCCTTCAAAACCATT
ACCACTTGGGTGATTCTTACATATTACCAAGTCCAGCTGTAGTATGTATT
TTTTTTCTCCCCCCCCCTCTGTAATACCGCTCCTTCACAAAAAAAAGAGA
ACTCTTCCCAAAAGATTTCACCCCAGTGATGTTAATCTCCTTCTTAATCA
CCACTAAATTCTTTGCTCCAGCTAAACAGCATCAGTTGTCCCAGTAGTCC
CCTCTATGGAGTCTAAAGCCATATGGCCAAAGCTGCTGAGCTCTGTTGTT
TGCTGGAGCTGGAATATGGACCCCTTGCTCTATTACGTTATCACCATCTT
TCTGTTTTTCTAACTCAATCATTGCCGAAGCTTGACTGTCTTAAACCTTG
CTCTATACATTGACTTTGAACTCAGAGATCTGCATGCCTCTGTCTCCTGA
ATGCTGGGATTAAAGGCATGTACCGCACTGCCTGGACCTAAACTTTTTCC
CACCAAGAACTTGCTCTCTGTCAGACTAGCCTTGACCTCCAAGGTCCCCT
TTGCTTTTGTCTCCTGCGATTAACTGTGGGTCCAGACCTGGGTCTAAACC
TTTTCATGGTCCACTATTCCTCCACATTATGATCCAAAACCTGTGTCTTC
CTACCTCCAAATCTGGTATCAATATGTGCCCTCCCCCTTCTTAGAATTAA
CTTTCATCTCCCAATTTATATCTCCCTTTTACAAACCCATTTCTCATTAT
TAATTCCCTAACTCCTCTATATCTTTTCCTTTTCTCTACTCTCCTATTCT
CCATACAATTTTCTTTTTCTCTTTGCTCTCCAATTCTTCCTCCTGAAAAT
TACCCCCCACCAAACTC
NCCCCATGACGCGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTAATCTTAATATTTATGAGTTATA
CTAAAATGTAGATTTTATTGTGACATTTTTATACTTGTGCAAAATGAGCT
TTGTTTATATATCTTCATTACTTTCTTCATCTATTTTAAAGAATTTTTTC
TAGCTATATTAATGTTTGAGTCAGTGGTTTACTCTCATGGCCTCAAATAT
TATACCTTACTTTGCTTTCAGAATTTTTGCTGAAAGGTATGCTTTTATTT
TGATTGGTTTGCCTCTATAAATAATTTGGCACATCTTGCTTTTAGCTTTC
AATTACTTCTCTGTCCTGTATATTTGGCATTTCTCCCTATAATGAGTTGT
AGACATATTTTTTCCTGGTCATATCTACTTGGGATTTTAAATTATATTTT
TTTTCCCCCCCCCGCATCTTTCTCTCCCCCCGCAAAAAAAAAGGATTATA
TTTGATAAATATGTTTTGAACGCCTTTAGTTTATATATCACCTGCAGAGG
ACACTGCAACCTTCCCATCCAGCAGGGAGATGATCTACGTGAGGTAAAAA
TGAAATTTGGGTCAGTATGGATTAGTCAGTCTTAGGTCAAAAACTTGTGG
AGTCTGACAAAGCAGTGTACTTTATTTATACATTTATACCCAGTAGCAAA
TTGGAAAAAAAAGTTTCCATGTGACAATTATCATTACCAAGGTTGAGGAA
GTTAGGCTAAATTCCTAATTTCCAAATTCCTTTTATAAAGTATTTTTCCT
TATCACAGCTCTGGTGACCCTTTTTTTATACAAGAGTGGCTTCTATTGTC
AAAAAACAGTGCCTCCATATAACTGCTTAACGAGAAAAAACTTTTAACTA
AACCCTATAAATTTTGCATTCTCGTGGACCTCCAACAAAATGTTTTAAAA
TCCCTGCCAAAGTAACTTTAACCCCCGGAATATTTTAAAATGCCTCACAA
CTACCCGTCAATTTACCCCCCTCCCCTTTATATCCCTCCCCCACAAAAAA
TAAATAATGGCTCCTCTCTTTTGTCTTCAAACAATAAACTTCTTGCGCTC
TTTAACCATTCTCGAATTTTTTATATCGACATCCAACTTTCCTCCCCCTT
TATTGTCACTCTTTTCCCCTCTTCTTATTATTTCTCATAACAAAAATATT
TTTCGTCTTGCAACTCTCATCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_a02.g1 MSMg01no211_a02.g1 CHROMAT_FILE:
MSMg01no211_a02.g1 PHD_FILE: MSMg01no211_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:46 2005
         (384 letters)



>mm_chr2_81316094_81316877
          Length = 784

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttaatcttaatatttatgagttatactaaaatgtagattttattgtgacatttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttaatcttaatatttatgagttatactaaaatgtagattttattgtgacatttttat 260

                                                                       
Query: 61  acttgtgcaaaatgagctttgtttatatatcttcattactttcttcatctattttaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtgcaaaatgagctttgtttatatatcttcattactttcttcatctattttaaaga 320

                                                                       
Query: 121 attttttctagctatattaatgtttgagtcagtggtttactctcatggcctcaaatatta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 attttttctagctatattaatgtttgagtcagtggtttactctcatggcctcaaatataa 380

                                                                       
Query: 181 taccttactttgctttcagaatttttgctgaaaggtatgcttttattttgattggtttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccttactttgctttcagaatttttgctgaaaggtatgcttttattttgattggtttgc 440

                                                                       
Query: 241 ctctataaataatttggcacatcttgcttttagctttcaattacttctctgtcctgtata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctataaataatttggcacatcttgcttttagctttcaattacttctctgtcctgtata 500

                                                                       
Query: 301 tttggcatttctccctataatgagttgtagacatattttttcctggtcatatctacttgg 360
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 501 tttggcatttctccctataatgagatgtagacatgttttttcctggtcatatctacttgg 560

                            
Query: 361 gattttaaattatattt 377
           |||||||||||||||||
Sbjct: 561 gattttaaattatattt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)