BAC Information

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BAC

Clone NameMSMg01-211A18
Chromosome2 (Build37)
Map Location 146,805,762 - 146,883,716
singlet/doubletdoublet
Overlap geneXrn2
Upstream geneInsm1, A230067G21Rik, LOC668918, Gm114
Downstream geneNkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211A18.T7 (MSMg01no211_a18.b1)MSMg01-211A18.TJ (MSMg01no211_a18.g1)
ACCAG392933AG392934
length1,2341,264
length of high quality
(start - end)		422 (29 - 450)379 (73 - 451)
definitionCHROMAT_FILE: MSMg01no211_a18.b1 PHD_FILE: MSMg01no211_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:52 2005CHROMAT_FILE: MSMg01no211_a18.g1 PHD_FILE: MSMg01no211_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,805,762 - 146,806,164)(146,883,338 - 146,883,716)
sequence
NNCCCCCTATGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTATAAAATCATTAGTTCATCTAAACAATATTATTTTATGAAAGTTCATC
TTTATATTGATCTGCAGGAAAATTGCCCAATAGAAAATCTCTAGTTTCCT
TACTCTCAACCCCAATGGTCTTGGTTCTTGGGCTCCTAAATGTATTCAGA
CAGAACATAGCAGTATATCAAATAGTCGAGGGTTTAACTAAGGACGCAGG
CATATACTCTATTTTCTTTGAAATTTTTTGTACAGTTTTACACTGCATCT
TGGTCACACCCACACCACCTCTACTTCTCCCCTTCTACTCTCCTCAAGAA
AACTCTCTTCCAAGTTCAGGTCCTCTTCTTTTTTAATGACAGCCAATTGT
TGTTAGCTCCTCAGTAGGGGTGGGGCACAGGAACTCCCCCCCCCCAATTT
TTTTTCCCCCCCCCCCACTTCTGAAAAGGATCGCAAAAAAAAGAGGAGCA
TCTGCTGAGGCCTGGCAGTCTTTGGGATTATACCTTTTCCTGTTATTTCC
CCCACCCCCACCCCCATTTCATTCAGCATCAGCGCTTTGGGGAGAAGAAC
ATGCTTTTCCCAGAAGCCCACTTTCCCCAGAATTCAGTTTGTTTTAAAAC
ACACAATAATATGATACAATAATAGAGAGAGAGGTTAAGTATCCCTAAAG
TTGAAAACTACTCGGGAAAGGGGTAACAACACTTTGCCATGTGCTTCCCT
GTAGACTTTGTCTTGAAGATGCTTTAAGCTAACCTAGGTAGCATGGGCTA
CTATCACCCACTGTCCCTTACATCTTGTTTTTGAAGCCCTAAGCTGGCCC
GTTTGATATTGCATACCCCCATTAGATATACTTTCCTCTTTCAGGCTATT
GAGCTGGCCTACCCCAGTGTTCTTTATGTCCTTATTTGGGGAAACCTTGT
TGGTTCAAACCTTTCTGAACTTATCCTCTTTCCTAAACAAACTAATGTCT
TGTTAAGTTGTTCTTTTCAAATGACCTCTATTGATAACTTTTCTCCTTTG
GTCCCCCAAACTTATATAGTTCCTTTTTAAAAATACCTCTTACCCTCTTT
CCTTTTGTAGTCTTTTGTCTATTTTTTTTTTTTTAACCTACTTTGTTTTA
TCCTCTCCCATCATCCTATCTTCTTCTTTTACTTCCCTTCGTTTGTACTT
TATAAATTATTTTCTTCTTACTTTCTCTTCTGTT

NNTTAATATGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCTGAAGACCCAAAACCCCAATGGAACT
GATAGACTTAGTAAAGATACAGGATATAAAAATCAACACACACACACACA
ATGAGAAAGAGAGAGAAAAGAGGGGGGACAAAGAGACAAAGAGACAATAC
CCCCCAACCCCCAATTACTAACAAACTCTTGCTGAAAAACAAATTTTAAA
AAGCAGTCTCATATGGCTAAAAGAAATGGCTCAGTAGTTAAAGGCACTTG
CTGCTCTTTGCAGAGGACCTGTACCCACACCAGGCAGCTCACAACCACTA
TAACTCTAGTTCCAGAGGATCCAGCATCTCTTTCTAACATCCTCAGGTAC
TTTTTCAAACATTCAAGCACACACACATAAAAAACATTTTTTAGAGGCCA
TATTTTTTTTCCCCCCCCCGCTTTACAGGCCCCCCCCCTAAAAAAAAGGG
GGGTNTTANNGTTNTTTATATCTGCTATCAAAATGCTGACAGTGACAAAA
AGTTCACGATATACAAAAAGGTAGAGATATATCCCAAGCTCAAGAAACAG
AGCCTTTAATATTGCTACAATGTTCATATTACCAAAAGCAGTCTAAAGGT
ATAAAACAATAGCCATGAAACTACAAATACCATTCTTCATAGTATTATGA
AGAATAATCACATAAACCACATGGGATCCCTAGCAAATAAAGCATCCTGA
GCAAAACCAAACAAAGCTGACGTGCCCTCAGACTTTGACTTCAAAATGCA
TACCCAGAACCCATTCTACCCTGACAAATACTCTAGAAATTAATTGGTGT
CTTCCCAGCCCCCCTGAGTTTGAACAAGGTATCTAGAACCTACTTTGCCT
CACTAATTGTTGGGAAAATGTTTTTACCTTTTGCCGAAAAATAAAATGTT
AGCCCCCCATGTTTTCCCTTTATACAACCTCTACATATCCCCATTTTCTG
CCCCGTGGTTTACTAACCTCCTTACACAGGGATATTTTCCTTTCGATCTT
ATCAGTATGTCCAATTTTTTCTTTTGGTTTGTACATTCTCTTATGTCCCA
TCATCTTACCCTCACCAAATCTTCTTCGCTTCCCTCCCTTATGTTATGTC
ATTTGTCCATCNCTTTTTGGCTCATTGAATTCTCCTTCACATAACTCAAA
CATATGGGTTCTCATCTTCTTTGTAAAATACATCATTCTCTCTTTCCCTC
ACTGTCCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_a18.b1 MSMg01no211_a18.b1 CHROMAT_FILE:
MSMg01no211_a18.b1 PHD_FILE: MSMg01no211_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:52 2005
         (422 letters)



>mm_chr2_146805546_146806367
          Length = 822

 Score =  772 bits (399), Expect = 0.0
 Identities = 402/403 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggaattctataaaatcattagttcatctaaacaatattattttatgaaagttcatcttta 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ggaattctataaaatcattagttcatctaaacaatattattttatgaaagttcatcttta 276

                                                                       
Query: 77  tattgatctgcaggaaaattgcccaatagaaaatctctagtttccttactctcaacccca 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tattgatctgcaggaaaattgcccaatagaaaatctctagtttccttactctcaacccca 336

                                                                       
Query: 137 atggtcttggttcttgggctcctaaatgtattcagacagaacatagcagtatatcaaata 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atggtcttggttcttgggctcctaaatgtattcagacagaacatagcagtatatcaaata 396

                                                                       
Query: 197 gtcgagggtttaactaaggacgcaggcatatactctattttctttgaaattttttgtaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtcgagggtttaactaaggacgcaggcatatactctattttctttgaaattttttgtaca 456

                                                                       
Query: 257 gttttacactgcatcttggtcacacccacaccacctctacttctccccttctactctcct 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gttttacactgcatcttggtcacacccacaccacctctacttctccccttctactctcct 516

                                                                       
Query: 317 caagaaaactctcttccaagttcaggtcctcttcttttttaatgacagccaattgttgtt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 517 caagaaaactctcttccaagttcaggtcctcttcttttttaatgacagccaattgctgtt 576

                                                      
Query: 377 agctcctcagtaggggtggggcacaggaactccccccccccaa 419
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agctcctcagtaggggtggggcacaggaactccccccccccaa 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no211_a18.g1 MSMg01no211_a18.g1 CHROMAT_FILE:
MSMg01no211_a18.g1 PHD_FILE: MSMg01no211_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:52 2005
         (379 letters)



>mm_chr2_146883325_146884103
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgaagacccaaaaccccaatggaactgatagacttagtaaagatacaggatataaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cctgaagacccaaaaccccaatggaactgatagacttagtaaagatacaggatataaaaa 333

                                                                       
Query: 61  tcaacacacacacacacaatgagaaagagagagaaaagaggggggacaaagagacaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcaacacacacacacacaatgagaaagagagagaaaagaggggggacaaagagacaaaga 273

                                                                       
Query: 121 gacaataccccccaacccccaattactaacaaactcttgctgaaaaacaaattttaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gacaataccccccaacccccaattactaacaaactcttgctgaaaaacaaattttaaaaa 213

                                                                       
Query: 181 gcagtctcatatggctaaaagaaatggctcagtagttaaaggcacttgctgctctttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gcagtctcatatggctaaaagaaatggctcagtagttaaaggcacttgctgctctttgca 153

                                                                       
Query: 241 gaggacctgtacccacaccaggcagctcacaaccactataactctagttccagaggatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaggacctgtacccacaccaggcagctcacaaccactataactctagttccagaggatcc 93

                                                                       
Query: 301 agcatctctttctaacatcctcaggtactttttcaaacattcaagcacacacacataaaa 360
           ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 92  agcatctctttctaacatcctcaggtacttgcacaaacattcaagcacacacacataaaa 33

                              
Query: 361 aacattttttagaggccat 379
           |||||||||||||||||||
Sbjct: 32  aacattttttagaggccat 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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